YRC Public Data Repository - Protein Structure Prediction

Protein:	RPC9_CAVPO
Organism:	Cavia porcellus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPC9_CAVPO.

Description	E-value	Query Range	Subject Range
gi\|76653291 - gi\|76653291\|ref\|XP_584162.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	175.0	[0..1]	[146..66]
gi\|50751915 - gi\|50751915\|ref\|XP_422576.1\| PREDICTED: similar to RIKEN cDNA 2610028L19 [Gallus gallus]	149.0	[0..6]	[120..244]
gi\|73957611 - gi\|73957611\|ref\|XP_536833.2\| PREDICTED: similar to Calcitonin gene-related peptide-receptor componen...	146.0	[0..1]	[146..1]
gi\|55628662 - gi\|55628662\|ref\|XP_519126.1\| PREDICTED: calcitonin gene-related peptide-receptor component protein i... CRCP - CGRP receptor component	144.0	[0..1]	[146..1]
gi\|47221798 - gi\|47221798\|emb\|CAG08852.1\| unnamed protein product [Tetraodon nigroviridis]	142.0	[0..1]	[144..1]
gi\|113679332, gi... - gi\|182891474\|gb\|AAI64588.1\| Rcp9 protein [Danio rerio], gi\|113679332\|ref\|NP_001038838.1\| calcitonin ...	141.0	[0..1]	[144..1]
CE01606 - WBGene00010911 Zinc-binding dehydrogenases status:Partially_confirmed TR:Q09593 protein_id:CAA87050....	140.0	[0..1]	[130..402]
gi\|89272907, gi\|... - gi\|89272907\|emb\|CAJ82922.1\| calcitonin gene-related peptide-receptor component protein crcp [Xenopus...	140.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVKDANSAL LSNYEVFQLL TDLKDQRRES GKMKHSAGQQ NLNTITYETL KYLSKTPCRH  60
   61 QSPEIVREFL TAMKSHKLTK AEKLQLLNHR PMTAVEIQLM VEETEERFTE EEQIEALLHT 120
  121 VTHILPAEPE VEQMASTEAM EEEGPA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.30103
Match:	2c35A
Description:	Subunits Rpb4 and Rpb7 of human RNA polymerase II
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleotidyltransferase activity	5.28965471523529	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	3.88827529846212	bayes_pls_golite062009
DNA-directed RNA polymerase activity	2.92140702040469	bayes_pls_golite062009
RNA polymerase activity	2.92140702040469	bayes_pls_golite062009
transferase activity	2.69774582611316	bayes_pls_golite062009
transcription regulator activity	1.87390721454777	bayes_pls_golite062009
binding	1.4918873731138	bayes_pls_golite062009
catalytic activity	1.17990683373825	bayes_pls_golite062009
protein binding	0.497114544861103	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: