YRC Public Data Repository - Protein Structure Prediction

Protein:	CYNX_ECOLI
Organism:	Escherichia coli
Length:	384 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYNX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	170.0	[0..2]	[382..304]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	168.0	[0..1]	[375..452]
gi\|60467752, gi\|... - gi\|60467752\|gb\|EAL65769.1\| hypothetical protein DDB0191430 [Dictyostelium discoideum], gi\|29500764\|g... gi\|60467752, gi\|... - gi\|66810832\|ref\|XP_639123.1\| major facilitator superfamily transporter [Dictyostelium discoideum AX4...	163.0	[0..1]	[371..603]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	155.0	[0..2]	[379..385]
gi\|68389434 - gi\|68389434\|ref\|XP_691920.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent inorga...	150.0	[0..1]	[370..146]
gi\|67536615, gi\|... - gi\|67542336\|ref\|ZP_00420273.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	148.0	[0..2]	[379..280]
gi\|89156189, gi\|... - gi\|89205963\|ref\|ZP_01184528.1\| General substrate transporter:Major facilitator superfamily MFS_1 [Ba...	145.0	[0..1]	[378..12]
gi\|228635612, gi... - gi\|229147962\|ref\|ZP_04276303.1\| metabolite transport protein yceI [Bacillus cereus BDRD-ST24], gi\|22... gi\|228653005, gi... - gi\|229130666\|ref\|ZP_04259622.1\| metabolite transport protein yceI [Bacillus cereus BDRD-Cer4], gi\|22... gi\|228670665, gi... - gi\|229112831\|ref\|ZP_04242363.1\| metabolite transport protein yceI [Bacillus cereus Rock1-15], gi\|228... gi\|29899009, gi\|... - gi\|30023448\|ref\|NP_835079.1\| major facilitator transporter [Bacillus cereus ATCC 14579], gi\|29899009...	144.0	[0..1]	[378..12]
gi\|47554777, gi\|... - gi\|47568535\|ref\|ZP_00239234.1\| major facilitator family transporter [Bacillus cereus G9241], gi\|4755...	144.0	[0..1]	[381..12]
gi\|51978696, gi\|... - gi\|52145227\|ref\|YP_086684.1\| major facilitator family transporter [Bacillus cereus E33L], gi\|5197869...	143.0	[0..1]	[381..12]

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Predicted Domain #1

Region A:
Residues: [1-384]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVLVLIGL NMRPLLTSVG PLLPQLRQAS GMSFSVAALL TALPVVTMGG LALAGSWLHQ  60
   61 HVSERRSVAI SLLLIAVGAL MRELYPQSAL LLSSALLGGV GIGIIQAVMP SVIKRRFQQR 120
  121 TPLVMGLWSA ALMGGGGLGA AITPWLVQHS ETWYQTLAWW ALPAVVALFA WWWQSAREVA 180
  181 SSHKTTTTPV RVVFTPRAWT LGVYFGLING GYASLIAWLP AFYIEIGASA QYSGSLLALM 240
  241 TLGQAAGALL MPAMARHQDR RKLLMLALVL QLVGFCGFIW LPMQLPVLWA MVCGLGLGGA 300
  301 FPLCLLLALD HSVQPAIAGK LVAFMQGIGF IIAGLAPWFS GVLRSISGNY LMDWAFHALC 360
  361 VVGLMIITLR FAPVRFPQLW VKEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.30103
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits