YRC Public Data Repository - Protein Structure Prediction

Protein:	CYSC_CLOAB
Organism:	Clostridium acetobutylicum
Length:	200 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYSC_CLOAB.

Description	E-value	Query Range	Subject Range
gi\|110284175, gi... - gi\|69280172\|ref\|ZP_00614844.1\| Adenylylsulfate kinase [Mesorhizobium sp. BNC1], gi\|68189596\|gb\|EAN04...	186.0	[0..4]	[199..443]
gi\|56962388, gi\|... - gi\|56962388\|ref\|YP_174114.1\| adenylylsulfate kinase [Bacillus clausii KSM-K16], gi\|56908626\|dbj\|BAD6...	185.0	[0..1]	[200..1]
CYSC_MARHV - Adenylyl-sulfate kinase OS=Marinobacter hydrocarbonoclasticus (strain ATCC 700491 / DSM 11845 / VT8)...	185.0	[0..7]	[200..2]
gi\|33150442 - gi\|33150442\|gb\|AAP97123.1\| adenosine 5'-phosphosulfate kinase [Porphyra purpurea]	183.0	[0..6]	[200..2]
gi\|69152246, gi\|... - gi\|69936309\|ref\|ZP_00631135.1\| Adenylylsulfate kinase:Small GTP-binding protein domain [Paracoccus d...	182.0	[0..4]	[194..444]
gi\|78213928, gi\|... - gi\|78213928\|ref\|YP_382707.1\| adenylylsulfate kinase [Synechococcus sp. CC9605], gi\|78198387\|gb\|ABB36...	182.0	[0..2]	[200..12]
gi\|103487011, gi... - gi\|98977088\|gb\|ABF53239.1\| sulfate adenylyltransferase subunit 1 / adenylylsulfate kinase [Sphingopy...	182.0	[0..4]	[194..440]
gi\|106760900, gi... - gi\|119944563\|ref\|YP_942243.1\| adenylyl-sulfate kinase [Psychromonas ingrahamii 37], gi\|119863167\|gb\|...	181.0	[0..1]	[200..10]
gi\|114227886, gi... - gi\|78701063\|ref\|ZP_00865516.1\| Adenylylsulfate kinase:Sulfate adenylyltransferase, large subunit [Al...	181.0	[0..5]	[200..441]
gi\|48850516, gi\|... - gi\|87201265\|ref\|YP_498522.1\| bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kina...	181.0	[0..4]	[194..446]

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Predicted Domain #1

Region A:
Residues: [1-200]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNKKSTNVV WQETKIKRQN REKMLKQKGA VLWFTGLSGS GKSTVASALE KKLYEMGYLT  60
   61 YLLDGDNLRY GLNSDLGFKS EDRTENIRRV SEVAKLFADA GIITITTFIS PFIEDRNNAR 120
  121 KLLGKDFVEV YIDCPIEVCE KRDPKGIYKK ARNGEIKNFT GIDSPYEKPE KPEITVETYK 180
  181 DTEEKCVDNI IEYLKQHKIL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1x6vB
Description:	The crystal structure of human 3'-phosphoadenosine-5'-phosphosulfate synthetase 1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	2.0914769303586	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
nucleic acid binding	0.727912309521959	bayes_pls_golite062009
DNA binding	0.263924823205515	bayes_pls_golite062009
nucleotide binding	0.0593371872166591	bayes_pls_golite062009
purine nucleotide binding	0.0285347443435678	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: