YRC Public Data Repository - Protein Structure Prediction

Protein:	CYTC_RABIT
Organism:	Oryctolagus cuniculus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYTC_RABIT.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	162.0	[0..1]	[148..1]
CYTC_MACMU - Cystatin-C OS=Macaca mulatta GN=CST3 PE=2 SV=1	156.0	[0..23]	[148..21]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	156.0	[0..24]	[148..22]
gi\|60831800 - gi\|60831800\|gb\|AAX36984.1\| cystatin C [synthetic construct]	155.0	[0..23]	[148..21]
CST3 - cystatin C HGNC:2475\|MIM:60... - C, C gi\|61360748, gi\|... - gi\|61360752\|gb\|AAX41919.1\| cystatin C [synthetic construct], gi\|61360748\|gb\|AAX41918.1\| cystatin C [...	155.0	[0..23]	[148..21]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLGVPLL LLAALVVALA LAVSPAAGAR TRQSPRLLGG LEDVDAQEKD VQRALGFAES  60
   61 EYNKGSNDRY HSRALQVVRA RRQIVSGVKY YLDVLIGRTT CTKTQTNLAN CPFHDQPDLQ 120
  121 RKMLCSFEIY SVPWLNKISL LKSDCQNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits