YRC Public Data Repository - Protein Structure Prediction

Protein:	CYTC_SAISC
Organism:	Saimiri sciureus
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYTC_SAISC.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	160.0	[0..1]	[146..1]
CYTC_MACMU - Cystatin-C OS=Macaca mulatta GN=CST3 PE=2 SV=1	155.0	[0..21]	[146..21]
gi\|60831800 - gi\|60831800\|gb\|AAX36984.1\| cystatin C [synthetic construct]	153.0	[0..21]	[146..21]
gi\|181387 - gi\|181387\|gb\|AAA52164.1\| cystatin C	153.0	[0..21]	[146..21]
CYTC_RABIT - Cystatin-C OS=Oryctolagus cuniculus GN=CST3 PE=2 SV=1	153.0	[0..22]	[146..24]
gi\|55651363, gi\|... - gi\|55651363\|ref\|XP_514553.1\| PREDICTED: similar to cystain S isoform 2 [Pan troglodytes], gi\|1146812...	150.0	[0..26]	[146..21]

Back

Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGPLRAPLL LLAILAVALA LSPAAGASPG RTPRLLGGPM DASVEEEGVR RALDFAVSEY  60
   61 NKASNDMYHS RALQVVRARK QIVAGVNYFL DVEMGRTTCT KNQPNLDNCP FHEQPHLKRK 120
  121 AFCSFQIYSV PWQGIMTLSK STCQDA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1g96A
Description:	Cystatin C
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits