YRC Public Data Repository - Protein Structure Prediction

Protein:	CYT_CHICK
Organism:	Gallus gallus
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CYT_CHICK.

Description	E-value	Query Range	Subject Range
gi\|192912, gi\|109759 - gi\|192912\|gb\|AAA63298.1\| cystatin C, pir\|\|A36163 cystatin C precursor - mouse	154.0	[0..1]	[139..1]
gi\|109093125 - gi\|109093125\|ref\|XP_001097284.1\| PREDICTED: cystatin SA [Macaca mulatta]	152.0	[0..21]	[139..21]
gi\|113205858, gi... - gi\|113205858\|ref\|NP_001038067.1\| cystatin C [Sus scrofa], gi\|110006616\|gb\|ABG48755.1\| cystatin C [Su...	148.0	[0..18]	[139..23]
gi\|539565, gi\|398711 - pir\|\|A47142 cystatin D precursor - human, gi\|398711\|emb\|CAA49838.1\| cystatin D [Homo sapiens]	148.0	[0..1]	[139..1]
gi\|55651363, gi\|... - gi\|55651363\|ref\|XP_514553.1\| PREDICTED: similar to cystain S isoform 2 [Pan troglodytes], gi\|1146812...	146.0	[0..21]	[139..21]
CYTC_SAISC - Cystatin-C OS=Saimiri sciureus GN=CST3 PE=2 SV=1	145.0	[0..19]	[139..24]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGARGCVVL LAAALMLVGA VLGSEDRSRL LGAPVPVDEN DEGLQRALQF AMAEYNRASN  60
   61 DKYSSRVVRV ISAKRQLVSG IKYILQVEIG RTTCPKSSGD LQSCEFHDEP EMAKYTTCTF 120
  121 VVYSIPWLNQ IKLLESKCQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.69897
Match:	1yvbI
Description:	No description for 1yvbI was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits