YRC Public Data Repository - Protein Structure Prediction

Protein:	DCUD_ECOLI
Organism:	Escherichia coli
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DCUD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	233.0	[0..19]	[453..372]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	210.0	[0..68]	[453..1]
gi\|25320905 - pir\|\|G83983 C4-dicarboxylate transport system (permease large protein) BH2671 [imported] - Bacillus ... gi\|15615234, gi\|... - gi\|15615234\|ref\|NP_243537.1\| C4-dicarboxylate transport system (permease large protein) [Bacillus ha...	183.0	[0..23]	[453..1]
gi\|84503024, gi\|... - gi\|84503024\|ref\|ZP_01001120.1\| TRAP transporter, DctM subunit [Oceanicola batsensis HTCC2597], gi\|84...	183.0	[0..23]	[454..1]
gi\|56679205, gi\|... - gi\|56697468\|ref\|YP_167836.1\| TRAP transporter, DctM subunit [Ruegeria pomeroyi DSS-3], gi\|56679205\|g...	182.0	[0..23]	[454..1]
gi\|34483879 - gi\|34483879\|emb\|CAE10875.1\| LARGE INTEGRAL C4-DICARBOXYLATE MEMBRANE TRANSPORT PROTEIN,PUTATIVE [Wol... gi\|34558160 - gi\|34558160\|ref\|NP_907975.1\| C4-dicarboxylate membrane transporter [Wolinella succinogenes DSM 1740]	182.0	[0..23]	[453..1]
gi\|11351131 - pir\|\|B83001 probable C4-dicarboxylate transporter PA5169 [imported] - Pseudomonas aeruginosa (strain... DCTM_PSEAE - C4-dicarboxylate TRAP transporter large permease protein DctM OS=Pseudomonas aeruginosa (strain ATCC... gi\|126170062, gi... - gi\|84317807\|ref\|ZP_00966243.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|218894269, gi... - gi\|218894269\|ref\|YP_002443139.1\| putative C4-dicarboxylate transporter [Pseudomonas aeruginosa LESB5... gi\|107104270 - gi\|107104270\|ref\|ZP_01368188.1\| hypothetical protein PaerPA_01005344 [Pseudomonas aeruginosa PACS2]	182.0	[0..23]	[453..1]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	181.0	[0..23]	[453..1]
gi\|109674555, gi... - gi\|154174636\|ref\|YP_001409179.1\| C4-dicarboxylate transport system permease, large subunit [Campylob...	181.0	[0..23]	[453..1]
gi\|84684431, gi\|... - gi\|84684431\|ref\|ZP_01012332.1\| TRAP transporter, DctM subunit [Rhodobacterales bacterium HTCC2654], ...	180.0	[0..23]	[454..1]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFGIIISVIV LITMGYLILK NYKPQVVLAA AGIFLMMCGV WLGFGGVLDP TKSSGYLIVD  60
   61 IYNEILRMLS NRIAGLGLSI MAVGGYARYM ERIGASRAMV SLLSRPLKLI RSPYIILSAT 120
  121 YVIGQIMAQF ITSASGLGML LMVTLFPTLV SLGVSRLSAV AVIATTMSIE WGILETNSIF 180
  181 AAQVAGMKIA TYFFHYQLPV ASCVIISVAI SHFFVQRAFD KKDKNINHEQ AEQKALDNVP 240
  241 PLYYAILPVM PLILMLGSLF LAHVGLMQSE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [271-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHLVVVMLLS LTVTMFVEFF RKHNLRETMD DVQAFFDGMG TQFANVVTLV VAGEIFAKGL  60
   61 TTIGTVDAVI RGAEHSGLGG IGVMIIMALV IAICAIVMGS GNAPFMSFAS LIPNIAAGLH 120
  121 VPAVVMIMPM HFATTLARAV SPITAVVVVT SGIAGVSPFA VVKRTAIPMA VGFVVNMIAT 180
  181 ITLFY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits