YRC Public Data Repository - Protein Structure Prediction

Protein:	ENGB_ECOLI
Organism:	Escherichia coli
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ENGB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|254795855, gi... - gi\|254795855\|ref\|YP_003080692.1\| GTP-binding protein [Escherichia coli O157:H7 str. TW14359], gi\|254... ENGB_ECO57 - Probable GTP-binding protein EngB OS=Escherichia coli O157:H7 GN=engB PE=3 SV=1 gi\|208739798, gi... - gi\|208819675\|ref\|ZP_03259995.1\| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli O157:... ENGB_ECO5E - Probable GTP-binding protein EngB OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=engB PE=3 SV... gi\|217322516, gi... - gi\|217326295\|ref\|ZP_03442379.1\| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli O157:... gi\|168799576, gi... - gi\|189378061\|gb\|EDU96477.1\| putative GTP-binding protein EngB [Escherichia coli O157:H7 str. EC508],... gi\|195937501 - gi\|195937501\|ref\|ZP_03082883.1\| GTPase EngB [Escherichia coli O157:H7 str. EC4024] gi\|208727202, gi... - gi\|208807401\|ref\|ZP_03249738.1\| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli O157:... gi\|15834041, gi\|... - gi\|15834041\|ref\|NP_312814.1\| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli O157:H7 ... gi\|208814207, gi... - gi\|208814207\|ref\|ZP_03255536.1\| ribosome biogenesis GTP-binding protein YsxC [Escherichia coli O157:... gi\|168755530, gi... - gi\|189357180\|gb\|EDU75599.1\| putative GTP-binding protein EngB [Escherichia coli O157:H7 str. EC4401]... gi\|168768147, gi... - gi\|189362605\|gb\|EDU81024.1\| putative GTP-binding protein EngB [Escherichia coli O157:H7 str. EC4486]... gi\|189001573, gi... - gi\|189001573\|gb\|EDU70559.1\| putative GTP-binding protein EngB [Escherichia coli O157:H7 str. EC4076]... gi\|168786702, gi... - gi\|189373339\|gb\|EDU91755.1\| putative GTP-binding protein EngB [Escherichia coli O157:H7 str. EC869],... gi\|161367480 - gi\|161367480\|ref\|NP_290489.2\| GTPase EngB [Escherichia coli O157:H7 EDL933] gi\|209752828, gi... - pir\|\|C91227 essential GTPase for cell cycle [imported] - Escherichia coli (strain O157:H7, substrain...	172.0	[0..1]	[210..1]
gi\|126096374, gi... - gi\|126207582\|ref\|YP_001052807.1\| ribosome biogenesis GTP-binding protein YsxC [Actinobacillus pleuro... gi\|32035822 - gi\|32035822\|ref\|ZP_00135658.1\| COG0218: Predicted GTPase [Actinobacillus pleuropneumoniae serovar 1 ...	172.0	[0..1]	[199..1]
gi\|227885401, gi... - gi\|227885401\|ref\|ZP_04003206.1\| GTP-binding protein [Escherichia coli 83972], gi\|227837659\|gb\|EEJ481... gi\|75237830 - gi\|75237830\|ref\|ZP_00721845.1\| COG0218: Predicted GTPase [Escherichia coli F11] ENGB_ECOK1 - Probable GTP-binding protein EngB OS=Escherichia coli O1:K1 / APEC GN=engB PE=3 SV=1	171.0	[0..1]	[210..6]
gi\|213581475 - gi\|213581475\|ref\|ZP_03363301.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... ENGB_SALTY - Probable GTP-binding protein engB OS=Salmonella typhimurium GN=engB PE=3 SV=1 gi\|213425461 - gi\|213425461\|ref\|ZP_03358211.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... ENGB_SALTI - Probable GTP-binding protein engB OS=Salmonella typhi GN=engB PE=3 SV=1 gi\|213162853 - gi\|213162853\|ref\|ZP_03348563.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|204930344, gi... - gi\|204930344\|ref\|ZP_03221321.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica su... gi\|214002906 - gi\|214002906\|ref\|ZP_03413641.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213852344 - gi\|213852344\|ref\|ZP_03381876.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213650654 - gi\|213650654\|ref\|ZP_03380707.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|213609177 - gi\|213609177\|ref\|ZP_03369003.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. ... gi\|194468507, gi... - gi\|194468507\|ref\|ZP_03074491.1\| putative GTP-binding protein EngB [Salmonella enterica subsp. enteri... ENGB_SALHS - Probable GTP-binding protein EngB OS=Salmonella heidelberg (strain SL476) GN=engB PE=3 SV=1 gi\|195630199, gi... - gi\|195630199\|gb\|EDX48839.1\| putative GTP-binding protein EngB [Salmonella enterica subsp. enterica s... gi\|168263108, gi... - gi\|205348121\|gb\|EDZ34752.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... gi\|200387738, gi... - gi\|200387738\|ref\|ZP_03214350.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica su... gi\|197264265, gi... - gi\|197264265\|ref\|ZP_03164339.1\| putative GTP-binding protein EngB [Salmonella enterica subsp. enteri... ENGB_SALTY - Probable GTP-binding protein EngB OS=Salmonella typhimurium GN=engB PE=3 SV=1 ENGB_SALA4 - Probable GTP-binding protein EngB OS=Salmonella agona (strain SL483) GN=engB PE=3 SV=1 ENGB_SALSV - Probable GTP-binding protein EngB OS=Salmonella schwarzengrund (strain CVM19633) GN=engB PE=3 SV=1 ENGB_SALTI - Probable GTP-binding protein EngB OS=Salmonella typhi GN=engB PE=3 SV=1 gi\|16762431 - gi\|16762431\|ref\|NP_458048.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. CT1... ENGB_SALTY - Probable GTP-binding protein EngB OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN... gi\|29139555, gi\|... - gi\|29143919\|ref\|NP_807261.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2... ENGB_SALCH - Probable GTP-binding protein engB OS=Salmonella choleraesuis GN=engB PE=3 SV=1 gi\|238913941 - gi\|238913941\|ref\|ZP_04657778.1\| GTPase EngB [Salmonella enterica subsp. enterica serovar Tennessee s... ENGB_SALPA - Probable GTP-binding protein EngB OS=Salmonella paratyphi A GN=engB PE=3 SV=1 gi\|167551521, gi... - gi\|205323760\|gb\|EDZ11599.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... ENGB_SALCH - Probable GTP-binding protein EngB OS=Salmonella choleraesuis (strain SC-B67) GN=engB PE=3 SV=1 ENGB_SALPA - Probable GTP-binding protein EngB OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=engB PE=3... gi\|168244253, gi... - gi\|205336858\|gb\|EDZ23622.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... lcl\|NC_016856.1_... - [gene=yihA] [protein=GTPase EngB] [protein_id=YP_005240265.1] [location=complement(4222836..4223468)... gi\|168237615, gi... - gi\|197289331\|gb\|EDY28696.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... gi\|168232924, gi... - gi\|205332795\|gb\|EDZ19559.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... gi\|167995106, gi... - gi\|205327140\|gb\|EDZ13904.1\| ribosome biogenesis GTP-binding protein YsxC [Salmonella enterica subsp.... ENGB_SALCH - Probable GTP-binding protein EngB OS=Salmonella choleraesuis GN=engB PE=3 SV=1	170.0	[0..1]	[210..1]
ENGB_PASMU - Probable GTP-binding protein engB OS=Pasteurella multocida GN=engB PE=3 SV=1 ENGB_PASMU - Probable GTP-binding protein EngB OS=Pasteurella multocida (strain Pm70) GN=engB PE=3 SV=1	168.0	[0..3]	[199..5]
ENGB_MANSM - Probable GTP-binding protein EngB OS=Mannheimia succiniciproducens (strain MBEL55E) GN=engB PE=3 SV=...	167.0	[0..3]	[198..5]
gi\|46133299 - gi\|46133299\|ref\|ZP_00156960.2\| COG0218: Predicted GTPase [Haemophilus influenzae R2866]	166.0	[0..3]	[199..5]
ENGB_HAEI8 - Probable GTP-binding protein EngB OS=Haemophilus influenzae (strain 86-028NP) GN=engB PE=3 SV=1	165.0	[0..3]	[199..5]
gi\|113460478, gi... - gi\|113460478\|ref\|YP_718540.1\| GTPase EngB [Haemophilus somnus 129PT], gi\|112822521\|gb\|ABI24610.1\| ce...	165.0	[0..3]	[199..32]
DER_SHESR - GTPase Der OS=Shewanella sp. (strain MR-7) GN=der PE=3 SV=1	165.0	[0..12]	[204..184]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNLNYQQTH FVMSAPDIRH LPSDTGIEVA FAGRSNAGKS SALNTLTNQK SLARTSKTPG  60
   61 RTQLINLFEV ADGKRLVDLP GYGYAEVPEE MKRKWQRALG EYLEKRQSLQ GLVVLMDIRH 120
  121 PLKDLDQQMI EWAVDSNIAV LVLLTKADKL ASGARKAQLN MVREAVLAFN GDVQVETFSS 180
  181 LKKQGVDKLR QKLDTWFSEM QPVEETQDGE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.39794
Match:	1puiA
Description:	Probable GTPase EngB
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00104173493322	bayes_pls_golite062009
binding	0.594070128851006	bayes_pls_golite062009
nucleotide binding	0.420363502101565	bayes_pls_golite062009
purine ribonucleotide binding	0.367411877498365	bayes_pls_golite062009
ribonucleotide binding	0.36722531399857	bayes_pls_golite062009
purine nucleotide binding	0.356791014996496	bayes_pls_golite062009
hydrolase activity	0.16290960662326	bayes_pls_golite062009
GTPase activity	7.50328750023177E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: