Protein: | SO0859 |
Organism: | Shewanella oneidensis |
Length: | 1765 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO0859.
Description | E-value | Query Range |
Subject Range |
|
900.0 | [0..1] | [1765..1] |
|
898.0 | [0..1] | [1761..1] |
|
897.0 | [0..1] | [1761..1] |
|
870.0 | [0..1] | [1761..1] |
|
854.0 | [0..1] | [1764..1] |
|
851.0 | [0..1] | [1764..1] |
|
842.0 | [0..5] | [1762..7] |
|
811.0 | [0..1] | [1760..1] |
|
602.0 | [0..397] | [1688..14] |
|
600.0 | [0..33] | [1761..37] |
Region A: Residues: [1-294] |
1 11 21 31 41 51 | | | | | | 1 MDKSKLRTFR SKILSHIALP LILIMATVYG ITSWFNYLSI EKRLYENLAQ ESSHSASRLQ 60 61 FLLEHAQANT QGLSDFIGLL ADKDDINNPE KLKTVLTNRI QRNPDFFGSA IAFKPNTFPN 120 121 KKLFSPYVYR SGSGFNYLDI GADGYDYTDG NWDWWSKAIN QVGGYWSKAY FDEGAGNVLM 180 181 ITYAVPFGVQ PDYFGVTTVD LALDRLPEQL GIAPSRLVVL DDQGRLIFHS DKEKVLAASS 240 241 SGWLDKQNIK NIAFATLLND GQAGQASFVD DKGTVYLASV AEVAKLKWRV VVMV |
Detection Method: | |
Confidence: | 3.71 |
Match: | 2p7jA |
Description: | No description for 2p7jA was found. |
Term | Confidence | Notes |
two-component sensor activity | 2.88093868237858 | bayes_pls_golite062009 |
protein histidine kinase activity | 2.86151216540335 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 2.80671328721504 | bayes_pls_golite062009 |
protein kinase activity | 1.74105675066805 | bayes_pls_golite062009 |
two-component response regulator activity | 1.62873572477094 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 1.58981311381645 | bayes_pls_golite062009 |
kinase activity | 1.5133458700147 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 1.31628115739307 | bayes_pls_golite062009 |
signal transducer activity | 1.10204821596482 | bayes_pls_golite062009 |
molecular transducer activity | 1.10204821596482 | bayes_pls_golite062009 |
catalytic activity | 0.970922685016416 | bayes_pls_golite062009 |
transferase activity | 0.821780694868473 | bayes_pls_golite062009 |
binding | 0.704248066961418 | bayes_pls_golite062009 |
Region A: Residues: [295-410] |
1 11 21 31 41 51 | | | | | | 1 PKHELFASLL DDIASAILNL SLLTLLLLLT CYIAAKRLTR PLEALESGIL AFGQGKAQEL 60 61 TIPKGAVSEI VTLSETFNQM AALLAEREQA ILDSRGNRFA RLIDGMSDKS FYCSLD |
Detection Method: | |
Confidence: | 3.45 |
Match: | 2f95B |
Description: | M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [411-498] |
1 11 21 31 41 51 | | | | | | 1 PDGQLAQVSE GVTKVLGIPP ELLKRKYQRL FSANPLNEKN WEYTDLALKG QNVPPHQIEL 60 61 VDAKGQARRL DVFMQPLVSD TGELMSVE |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
Region A: Residues: [499-628] |
1 11 21 31 41 51 | | | | | | 1 MLFTDVTEQF SAAAWSNAVL EAAPEAMLIV DQNGQIVFSN SRCQQLFGYD AKAMLALQIE 60 61 TLLPEELRHL HTGERLDFLR EGRDRPMASA RHVRALKSDG GEFVAEIALS ILPSDFDGRR 120 121 QVAASIRDMT |
Detection Method: | |
Confidence: | 10.154902 |
Match: | 1d06A |
Description: | Histidine kinase FixL heme domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
ion transmembrane transporter activity | 1.94020112661684 | bayes_pls_golite062009 |
transcription regulator activity | 1.88422125389203 | bayes_pls_golite062009 |
binding | 1.79230776794479 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 1.70629448457771 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 1.55042643398568 | bayes_pls_golite062009 |
DNA binding | 1.54206275665781 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45691562840107 | bayes_pls_golite062009 |
nucleic acid binding | 1.41817054839611 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 1.31850321187865 | bayes_pls_golite062009 |
transcription factor activity | 1.12946889905444 | bayes_pls_golite062009 |
protein binding | 1.0133195984081 | bayes_pls_golite062009 |
potassium channel activity | 0.93265112299626 | bayes_pls_golite062009 |
voltage-gated ion channel activity | 0.92661046549451 | bayes_pls_golite062009 |
voltage-gated cation channel activity | 0.926512767264521 | bayes_pls_golite062009 |
voltage-gated potassium channel activity | 0.92204538811959 | bayes_pls_golite062009 |
voltage-gated channel activity | 0.91469735366704 | bayes_pls_golite062009 |
ion channel activity | 0.75430461252947 | bayes_pls_golite062009 |
cation channel activity | 0.73262554730695 | bayes_pls_golite062009 |
gated channel activity | 0.67217953143815 | bayes_pls_golite062009 |
substrate-specific channel activity | 0.650205954115699 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 0.64202076714636 | bayes_pls_golite062009 |
channel activity | 0.64202076714636 | bayes_pls_golite062009 |
two-component sensor activity | 0.58151911764083 | bayes_pls_golite062009 |
protein histidine kinase activity | 0.56538125817883 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 0.518111391350209 | bayes_pls_golite062009 |
signal transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
molecular transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
transporter activity | 0.360938622392148 | bayes_pls_golite062009 |
catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
transcription factor binding | 0.24293756478811 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.217804199010847 | bayes_pls_golite062009 |
Region A: Residues: [629-771] |
1 11 21 31 41 51 | | | | | | 1 QKIMVEQKIR DSELRFRGLV TNIPGAVYRT RIGEVWVIEY VSDNIAEITG YAASQFIENR 60 61 QRTFTSLILE DDRALCNQHI ERALAQQETF EVEYRIRHRD GSIRWVHEKG KASYSEEGLP 120 121 LWFDGSIDDV TESKLAIDEI EAS |
Detection Method: | |
Confidence: | 5.51 |
Match: | 2pr5A |
Description: | No description for 2pr5A was found. |
Region A: Residues: [772-900] |
1 11 21 31 41 51 | | | | | | 1 RQQLTNITES IPCTVYQLRW VSPTDRSFTF LSGAALAMLG LHREELLRDF NIIAERIFDE 60 61 ERPEVISALA GKSDDQLRWI REFRYRHPNG GIRWMEAGAS GHYADDGSII WNGYVMDVTE 120 121 RKSIEEELA |
Detection Method: | |
Confidence: | 8.69897 |
Match: | 2pr5A |
Description: | No description for 2pr5A was found. |
Region A: Residues: [901-1020] |
1 11 21 31 41 51 | | | | | | 1 VSEAHFKALF DGATIGIVNV DIKGLILDCN YQFCEDMGLS RDELRSTPIF DVLSAQDKDV 60 61 AKAQFKELVE GKIDHYRGER SFVRPSGEPL WMTVNVSTLL DSQNQFESAV VSMVDMTELK 120 121 |
Detection Method: | |
Confidence: | 9.522879 |
Match: | 1dp6A |
Description: | Histidine kinase FixL heme domain |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
ion transmembrane transporter activity | 1.94020112661684 | bayes_pls_golite062009 |
transcription regulator activity | 1.88422125389203 | bayes_pls_golite062009 |
binding | 1.79230776794479 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 1.70629448457771 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 1.55042643398568 | bayes_pls_golite062009 |
DNA binding | 1.54206275665781 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45691562840107 | bayes_pls_golite062009 |
nucleic acid binding | 1.41817054839611 | bayes_pls_golite062009 |
metal ion transmembrane transporter activity | 1.31850321187865 | bayes_pls_golite062009 |
transcription factor activity | 1.12946889905444 | bayes_pls_golite062009 |
protein binding | 1.0133195984081 | bayes_pls_golite062009 |
potassium channel activity | 0.93265112299626 | bayes_pls_golite062009 |
voltage-gated ion channel activity | 0.92661046549451 | bayes_pls_golite062009 |
voltage-gated cation channel activity | 0.926512767264521 | bayes_pls_golite062009 |
voltage-gated potassium channel activity | 0.92204538811959 | bayes_pls_golite062009 |
voltage-gated channel activity | 0.91469735366704 | bayes_pls_golite062009 |
ion channel activity | 0.75430461252947 | bayes_pls_golite062009 |
cation channel activity | 0.73262554730695 | bayes_pls_golite062009 |
gated channel activity | 0.67217953143815 | bayes_pls_golite062009 |
substrate-specific channel activity | 0.650205954115699 | bayes_pls_golite062009 |
passive transmembrane transporter activity | 0.64202076714636 | bayes_pls_golite062009 |
channel activity | 0.64202076714636 | bayes_pls_golite062009 |
two-component sensor activity | 0.58151911764083 | bayes_pls_golite062009 |
protein histidine kinase activity | 0.56538125817883 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 0.518111391350209 | bayes_pls_golite062009 |
signal transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
molecular transducer activity | 0.441034662376355 | bayes_pls_golite062009 |
transporter activity | 0.360938622392148 | bayes_pls_golite062009 |
catalytic activity | 0.285447488878019 | bayes_pls_golite062009 |
transcription factor binding | 0.24293756478811 | bayes_pls_golite062009 |
transmembrane transporter activity | 0.217804199010847 | bayes_pls_golite062009 |
Region A: Residues: [1021-1145] |
1 11 21 31 41 51 | | | | | | 1 LLSDELLVAK DEADAASKAK GDFLANMSHE IRTPMNAIIG MSQLCLQTQL DKKQKNYLEK 60 61 IERASQSLLS IINDILDFSK IEAGKLDIEN VSFQLDTMLE DLSDMFSERA AQKQIELLFA 120 121 VAPNV |
Detection Method: | |
Confidence: | 42.39794 |
Match: | 2c2aA |
Description: | Structure of the entire cytoplasmic portion of a sensor histidine kinase protein |
Matching Structure (courtesy of the PDB): |
Region A: Residues: [1146-1273] |
1 11 21 31 41 51 | | | | | | 1 PRHLLGDPLR LGQVLINLMN NAIKFTERGE VLLSLSLVEQ QNDDVVLRFS VRDSGIGLTQ 60 61 EQQSKLFKSF TQADTSTTRK YGGTGLGLAI SKQLVELMGG SIGVESQLGH GSTFFFTVKL 120 121 CISSGQKL |
Detection Method: | |
Confidence: | 4.69897 |
Match: | 2q2eB |
Description: | No description for 2q2eB was found. |
Region A: Residues: [1274-1639] |
1 11 21 31 41 51 | | | | | | 1 FVGQELDGMS ILVADDNATA RDIMRTTLES MGFNVDTVRS GDEAIMRCSQ QEYAVALIDW 60 61 KMPNLDGIET AKQIKQQTKN APRILMVSAH ANQDFLTQIE QLGLAGYISK PISASRLLDG 120 121 IMNALGRSGI LPVRRHQDNI APELLLPLKG KRILLVEDNE MNLEVATEFL EQVGIILSIA 180 181 TNGQIALDKL AQQSFDLVLM DCQMPVMDGY QATKAIRQRP ELAQLPVIAM TANAMAGDKE 240 241 MCLRAGMNDH IAKPIEVNLL YQTLLKYLGA PVPSLENAEF VVNESLNPLN LDVESVVKWP 300 301 EHPELDIDRG LQLVQNSKRL YQRIFDRFAT SQRNVVDQIN KALASNKRED AVRMAHTLKG 360 361 LAGNLS |
Detection Method: | |
Confidence: | 30.0 |
Match: | 1w25A |
Description: | Response regulator PleD in complex with c-diGMP |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
two-component response regulator activity | 7.02872640261738 | bayes_pls_golite062009 |
signal transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
molecular transducer activity | 4.51666042720644 | bayes_pls_golite062009 |
transcription regulator activity | 4.19396540145756 | bayes_pls_golite062009 |
protein histidine kinase activity | 2.35011582062573 | bayes_pls_golite062009 |
two-component sensor activity | 2.32303301074957 | bayes_pls_golite062009 |
phosphotransferase activity, nitrogenous group as acceptor | 2.28838869071567 | bayes_pls_golite062009 |
DNA binding | 1.9200042031022 | bayes_pls_golite062009 |
nucleic acid binding | 1.7951051076633 | bayes_pls_golite062009 |
transcription factor activity | 1.39074763877806 | bayes_pls_golite062009 |
binding | 1.22427537074115 | bayes_pls_golite062009 |
protein kinase activity | 1.00737355751913 | bayes_pls_golite062009 |
phosphotransferase activity, alcohol group as acceptor | 0.811771244977462 | bayes_pls_golite062009 |
kinase activity | 0.725824770559857 | bayes_pls_golite062009 |
transferase activity, transferring phosphorus-containing groups | 0.476057209677045 | bayes_pls_golite062009 |
Region A: Residues: [1640-1765] |
1 11 21 31 41 51 | | | | | | 1 SSKLAELARQ LELHLSENAD YQVELDQIQI LVASICEAIE KAKPQFEETS TSTAEHLPKD 60 61 ALIAALKQLR QSLEDADSDA VTQMDALKPQ MSALLWQQLS PALTMINQYQ FDEAVDLIDE 120 121 VLAKLT |
Detection Method: | |
Confidence: | 67.69897 |
Match: | 1ny5A |
Description: | Crystal structure of sigm54 activator (AAA+ ATPase) in the inactive state |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
nucleoside-triphosphatase activity | 1.95073642969863 | bayes_pls_golite062009 |
pyrophosphatase activity | 1.91141407779641 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides | 1.9017593265179 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 1.90014393273511 | bayes_pls_golite062009 |
anion transmembrane transporter activity | 1.84572377553607 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 1.608578860823 | bayes_pls_golite062009 |
transporter activity | 1.55572428045529 | bayes_pls_golite062009 |
anion transmembrane-transporting ATPase activity | 1.49339466967388 | bayes_pls_golite062009 |
ATPase activity | 1.48474288797022 | bayes_pls_golite062009 |
two-component response regulator activity | 1.45919623810582 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.38483976298883 | bayes_pls_golite062009 |
ATPase activity, coupled | 1.37457738689583 | bayes_pls_golite062009 |
catalytic activity | 1.37148167194523 | bayes_pls_golite062009 |
inorganic anion transmembrane transporter activity | 1.3654237778347 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 1.32358677895008 | bayes_pls_golite062009 |
binding | 1.30574971150356 | bayes_pls_golite062009 |
active transmembrane transporter activity | 1.24278046928678 | bayes_pls_golite062009 |
phosphate transmembrane transporter activity | 1.22440281711103 | bayes_pls_golite062009 |
P-P-bond-hydrolysis-driven transmembrane transporter activity | 1.2014318795788 | bayes_pls_golite062009 |
primary active transmembrane transporter activity | 1.19670408144267 | bayes_pls_golite062009 |
hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances | 1.17063957238561 | bayes_pls_golite062009 |
ATPase activity, coupled to movement of substances | 1.16918853509059 | bayes_pls_golite062009 |
ATPase activity, coupled to transmembrane movement of substances | 1.16885789920943 | bayes_pls_golite062009 |
hydrolase activity | 1.09839981963412 | bayes_pls_golite062009 |
phosphate transmembrane-transporting ATPase activity | 1.05293225786874 | bayes_pls_golite062009 |
ribonucleotide binding | 0.92950870381166 | bayes_pls_golite062009 |
purine ribonucleotide binding | 0.9275205656455 | bayes_pls_golite062009 |
purine nucleotide binding | 0.91280662021456 | bayes_pls_golite062009 |
nucleotide binding | 0.90809801369052 | bayes_pls_golite062009 |
ATP binding | 0.59269193555886 | bayes_pls_golite062009 |
cation transmembrane transporter activity | 0.575892074401446 | bayes_pls_golite062009 |
adenyl ribonucleotide binding | 0.57504013359401 | bayes_pls_golite062009 |
adenyl nucleotide binding | 0.54853610492983 | bayes_pls_golite062009 |
inorganic cation transmembrane transporter activity | 0.139527952740579 | bayes_pls_golite062009 |
substrate-specific transporter activity | 0.0838665746103899 | bayes_pls_golite062009 |
nucleic acid binding | 0.0251017125544788 | bayes_pls_golite062009 |