YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1952
Organism:	Shewanella oneidensis
Length:	579 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1952.

Description	E-value	Query Range	Subject Range
gi\|91793011, gi\|... - gi\|91793011\|ref\|YP_562662.1\| gamma-glutamyltransferase [Shewanella denitrificans OS217], gi\|91715013...	721.0	[0..6]	[579..10]
gi\|145564457, gi... - gi\|77816009\|ref\|ZP_00815221.1\| Gamma-glutamyltranspeptidase [Shewanella putrefaciens CN-32], gi\|7780...	715.0	[0..1]	[579..1]
gi\|120559255, gi... - gi\|82740814\|ref\|ZP_00903548.1\| Gamma-glutamyltranspeptidase [Shewanella sp. W3-18-1], gi\|82721800\|gb...	713.0	[0..1]	[579..1]
gi\|117613262, gi... - gi\|78686394\|ref\|ZP_00851162.1\| Gamma-glutamyltranspeptidase [Shewanella sp. ANA-3], gi\|78505863\|gb\|E...	713.0	[0..1]	[579..1]
gi\|113970632, gi... - gi\|82496698\|ref\|ZP_00882263.1\| Gamma-glutamyltranspeptidase [Shewanella sp. MR-4], gi\|82405273\|gb\|EA...	712.0	[0..1]	[579..1]
gi\|78508845, gi\|... - gi\|78691762\|ref\|ZP_00856359.1\| Gamma-glutamyltranspeptidase [Shewanella sp. MR-7], gi\|78508845\|gb\|EA...	712.0	[0..1]	[579..1]
gi\|113908078, gi... - gi\|160875845\|ref\|YP_001555161.1\| gamma-glutamyltransferase [Shewanella baltica OS195], gi\|160861367\|...	707.0	[0..1]	[579..1]
gi\|71362607, gi\|... - gi\|93006049\|ref\|YP_580486.1\| gamma-glutamyltransferase [Psychrobacter cryohalolentis K5], gi\|9239372...	705.0	[0..30]	[579..96]
gi\|68542980, gi\|... - gi\|68542980\|ref\|ZP_00582699.1\| Gamma-glutamyltranspeptidase [Shewanella baltica OS155], gi\|68519349\|...	705.0	[0..1]	[579..1]
gi\|126638381, gi... - gi\|78368773\|ref\|ZP_00838979.1\| Gamma-glutamyltranspeptidase [Shewanella sp. PV-4], gi\|78359176\|gb\|EA...	703.0	[0..4]	[579..1]

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Predicted Domain #1

Region A:
Residues: [1-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRPVRQLRPL ILAIAMALPL LSSPALYADE PSIFSQMATA QPVWAKHGMV ASQEMLASRT  60
   61 GVEILKQGGN AIDAAVAVAF SLAVTLPRAG NIGGGGFMLV HLAKENKTIA IDYREMAPSK 120
  121 AKKDIFLDEK GDAVAKLSRE HGLAVGVPGT VMGMSLALEK YGTMTMAQVT APAIKMAQEG 180
  181 ISVSPDLAVS LAGLKRRMSQ WPSTAAIFYK ADGSDYQVND MLKQPELAHS LQLIAQKGTK 240
  241 GFYEGETAAK LVEAVQKAGG IMTLEDLKHY KAVEREPVRG QYRGYEVVSM PPPSSGGVHI 300
  301 IEMLNVLQQF PIDKFGHNTA QTIHVMAETM KHAYADRSEY LGDPDYYNVP LKQLTDKDYA 360
  361 QKIASQIALN KTTPSEEIKP GNLAPYESDQ TTHFSVVDRW GNAVSNTYTL NFSYGSGLVA 420
  421 KGTGILLNNE MDDFSAKPGS PNGYGLVGGE ANSVEGNKRP LSSMSPTIVM KDGKPFLVTG 480
  481 SPGGSRIITT TLQIIMNVID HGLNIAEASN AARVHHQWLP DELRVETSLN RDTISLLEAK 540
  541 GHKVNVQSAM GSTQSIMVTE QGIFGASDLR HSGSEAVGY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2e0wA
Description:	No description for 2e0wA was found.

Predicted functions:

Term	Confidence	Notes
gamma-glutamyltransferase activity	2.74011689892782	bayes_pls_golite062009
peptidase activity	2.6421095563902	bayes_pls_golite062009
transferase activity, transferring amino-acyl groups	2.54551748261349	bayes_pls_golite062009
hydrolase activity	2.49721930187628	bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides	2.32542991193149	bayes_pls_golite062009
endopeptidase activity	2.29890628841519	bayes_pls_golite062009
catalytic activity	1.19663085909195	bayes_pls_golite062009
binding	0.752066499785082	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: