YRC Public Data Repository - Protein Structure Prediction

Protein:	SO2355
Organism:	Shewanella oneidensis
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO2355.

Description	E-value	Query Range	Subject Range
gi\|20905935, gi\|... - gi\|21227554\|ref\|NP_633476.1\| universal stress protein [Methanosarcina mazei Go1], gi\|20905935\|gb\|AAM...	216.0	[0..5]	[300..11]
gi\|127512922, gi... - gi\|78367942\|ref\|ZP_00838199.1\| UspA [Shewanella sp. PV-4], gi\|78360023\|gb\|EAP01868.1\| UspA [Shewanel...	212.0	[0..1]	[309..1]
gi\|119767435, gi... - gi\|68548184\|ref\|ZP_00587699.1\| UspA [Shewanella amazonensis SB2B], gi\|68514129\|gb\|EAN37875.1\| UspA [...	211.0	[0..1]	[309..1]
gi\|113885036, gi... - gi\|82498353\|ref\|ZP_00883855.1\| universal stress protein family [Shewanella sp. MR-4], gi\|82403655\|gb... gi\|117612892, gi... - gi\|78687463\|ref\|ZP_00852211.1\| universal stress protein family [Shewanella sp. ANA-3], gi\|78504815\|g... gi\|113888898, gi... - gi\|78691990\|ref\|ZP_00856571.1\| universal stress protein family [Shewanella sp. MR-7], gi\|78508609\|gb...	210.0	[0..1]	[310..1]
gi\|90578592, gi\|... - gi\|90578592\|ref\|ZP_01234402.1\| Putative universal stress protein family [Vibrio angustum S14], gi\|90...	207.0	[0..1]	[309..1]
gi\|152959253, gi... - gi\|77629297\|ref\|ZP_00791883.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|186895607, gi... - gi\|186895607\|ref\|YP_001872719.1\| universal stress protein UspE [Yersinia pseudotuberculosis PB1/+], ... gi\|229694184, gi... - gi\|229837818\|ref\|ZP_04457977.1\| stress-induced protein [Yersinia pestis biovar Orientalis str. PEXU2... gi\|169750714, gi... - gi\|170024180\|ref\|YP_001720685.1\| universal stress protein UspE [Yersinia pseudotuberculosis YPIII], ... gi\|229894978, gi... - gi\|229894978\|ref\|ZP_04510156.1\| stress-induced protein [Yersinia pestis Pestoides A], gi\|229702073\|g... gi\|229688669, gi... - gi\|229898379\|ref\|ZP_04513526.1\| stress-induced protein [Yersinia pestis biovar Orientalis str. India... gi\|165938562, gi... - gi\|89104626\|ref\|ZP_01177164.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|108807645, gi... - gi\|108807645\|ref\|YP_651561.1\| universal stress protein UspE [Yersinia pestis Antiqua], gi\|108779558\|... gi\|51589829, gi\|... - gi\|51596547\|ref\|YP_070738.1\| universal stress protein UspE [Yersinia pseudotuberculosis IP 32953], g... USPE_YERPE - Universal stress protein E OS=Yersinia pestis GN=uspE PE=3 SV=1 gi\|21958970, gi\|... - gi\|22126021\|ref\|NP_669444.1\| universal stress protein UspE [Yersinia pestis KIM], gi\|21958970\|gb\|AAM... gi\|165927167, gi... - gi\|165927167\|ref\|ZP_02222999.1\| universal stress protein E [Yersinia pestis biovar Orientalis str. F... gi\|218929393, gi... - gi\|218929393\|ref\|YP_002347268.1\| universal stress protein UspE [Yersinia pestis CO92], gi\|16122525\|r... gi\|166208336, gi... - gi\|166211156\|ref\|ZP_02237191.1\| universal stress protein E [Yersinia pestis biovar Antiqua str. B420... gi\|165990385, gi... - gi\|166010683\|ref\|ZP_02231581.1\| universal stress protein E [Yersinia pestis biovar Antiqua str. E197... gi\|166958982, gi... - gi\|167422170\|ref\|ZP_02313923.1\| universal stress protein E [Yersinia pestis biovar Orientalis str. M... gi\|167049806, gi... - gi\|167400953\|ref\|ZP_02306459.1\| universal stress protein E [Yersinia pestis biovar Antiqua str. UG05... gi\|167469357 - gi\|167469357\|ref\|ZP_02334061.1\| universal stress protein E [Yersinia pestis FV-1] gi\|167056208, gi... - gi\|167425021\|ref\|ZP_02316774.1\| universal stress protein E [Yersinia pestis biovar Mediaevalis str. ... gi\|149292199, gi... - gi\|149365786\|ref\|ZP_01887821.1\| putative stress protein [Yersinia pestis CA88-4125], gi\|149292199\|gb... gi\|145209840, gi... - gi\|145598144\|ref\|YP_001162220.1\| universal stress protein UspE [Yersinia pestis Pestoides F], gi\|145... Q66AA9\|Q66AA9_YERPS - Putative stress protein - Yersinia pseudotuberculosis	207.0	[0..1]	[308..1]
gi\|77963331, gi\|... - gi\|77963331\|ref\|ZP_00827142.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	207.0	[0..1]	[308..1]
gi\|125999789, gi... - gi\|68543434\|ref\|ZP_00583139.1\| UspA [Shewanella baltica OS155], gi\|68518849\|gb\|EAN42403.1\| UspA [She... gi\|217498529, gi... - gi\|217973394\|ref\|YP_002358145.1\| universal stress protein UspE [Shewanella baltica OS223], gi\|217498... gi\|160860846, gi... - gi\|160875324\|ref\|YP_001554640.1\| universal stress protein UspE [Shewanella baltica OS195], gi\|160860...	207.0	[0..1]	[310..1]
gi\|161501806 - gi\|161501806\|ref\|NP_761432.2\| universal stress protein UspE [Vibrio vulnificus CMCP6] gi\|37198609, gi\|... - gi\|37679864\|ref\|NP_934473.1\| universal stress protein UspE [Vibrio vulnificus YJ016], gi\|37198609\|db...	206.0	[0..1]	[309..1]
gi\|238790358, gi... - gi\|77975379\|ref\|ZP_00830915.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	206.0	[0..1]	[307..1]

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Predicted Domain #1

Region A:
Residues: [1-161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDYQKILVV VDPTTENQVA LARAVTLASK SNAHVTVFLS IFDFSYEMTS ILSSQEREAM  60
   61 RQGVIDQRVA WIQDLLAPYN HLGLNIDTQV IWHNRPFESI INHAIAGQYD LIVKGTHAHD 120
  121 KLKAVIFTPT DWHLMRKAPV PVLMVKDHDW PETGKILCAV N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.221849
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.151149560052223	bayes_pls_golite062009
catalytic activity	0.062439821475123	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [162-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VATEDTDHQM LNGKIIEHAK DLAGKFAAEV HLVNGFPGTP VNLAIELPDF DAQTYNDTIR  60
   61 LQHEQRVQYL ADAYGIDKQN CHVKEGLPED VIPELAEQLD AELVILGTVG RTGFSAALIG 120
  121 NTAEHVIDSI NCDLLAIKPD GYKSPLEEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.045757
Match:	2gm3A
Description:	No description for 2gm3A was found.

Predicted functions:

Term	Confidence	Notes
binding	0.151149560052223	bayes_pls_golite062009
catalytic activity	0.062439821475123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: