YRC Public Data Repository - Protein Structure Prediction

Protein:	SO4299
Organism:	Shewanella oneidensis
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO4299.

Description	E-value	Query Range	Subject Range
gi\|78359937, gi\|... - gi\|78368025\|ref\|ZP_00838280.1\| transferase hexapeptide repeat [Shewanella sp. PV-4], gi\|78359937\|gb\|...	175.0	[0..1]	[207..1]
gi\|120562457, gi... - gi\|120602228\|ref\|YP_966628.1\| antibiotic acetyltransferase [Desulfovibrio vulgaris subsp. vulgaris D...	172.0	[0..5]	[206..32]
gi\|30387188, gi\|... - gi\|30387188\|ref\|NP_848167.1\| CatB2 [Pasteurella multocida], gi\|30314011\|gb\|AAP15294.1\| chloramphenic...	171.0	[0..1]	[210..1]
gi\|46580401, gi\|... - gi\|46580401\|ref\|YP_011209.1\| antibiotic acetyltransferase [Desulfovibrio vulgaris subsp. vulgaris st... gi\|241880915, gi... - gi\|241906322\|ref\|ZP_04790904.1\| transferase hexapeptide repeat containing protein [Desulfovibrio vul...	171.0	[0..5]	[206..6]
gi\|3088627 - gi\|3088627\|gb\|AAC14737.1\| chloramphenicol acetyltransferase [Plasmid NR79] CAT4_ECOLI, CAT4... - Chloramphenicol acetyltransferase OS=Escherichia coli GN=catB2 PE=3 SV=1, Chloramphenicol acetyltran...	169.0	[0..1]	[210..1]
gi\|213958579 - gi\|213958579\|gb\|AAC14737.2\| chloramphenicol acetyltransferase [Plasmid NR79] gi\|24209734 - gi\|24209734\|gb\|AAN41434.1\| chloramphenicol acetyltransferase [uncultured bacterium] gi\|22266156 - gi\|22266156\|emb\|CAD31710.1\| chloramphenicol acetyltransferase [Salmonella enteritidis] gi\|22266156\|emb\|... - chloramphenicol acetyltransferase [Salmonella enteritidis] gi\|190410292, gi... - gi\|63146066\|gb\|AAY33967.1\| chloramphenicol acetyltransferase [Klebsiella pneumoniae], gi\|190410292\|r... gi\|215262450 - gi\|215262450\|emb\|CAT00057.1\| chloramphenicol acetyltransferase [Aeromonas sobria] CAT4_ECOLX - Chloramphenicol acetyltransferase OS=Escherichia coli GN=catB2 PE=3 SV=2 gi\|71060507 - gi\|71060507\|emb\|CAI56201.1\| chloramphenicol acetyltransferase [Bordetella bronchiseptica] gi\|225393064, gi... - gi\|74476630\|gb\|ABA08386.1\| chloramphenicol acetyltransferase [Acinetobacter baumannii], gi\|225393064... gi\|88911235 - gi\|88911235\|gb\|ABD58910.1\| CatB2 [Pseudomonas aeruginosa]	168.0	[0..1]	[210..1]
gi\|114147196, gi... - gi\|114147196\|gb\|ABI50482.1\| Cat-like protein [Klebsiella pneumoniae], gi\|114147182\|gb\|ABI50469.1\| Ca...	167.0	[0..1]	[210..1]
gi\|20530868 - gi\|20530868\|gb\|AAM27273.1\|AF418284_3 chloramphenicol acetyltransferase [Pseudomonas aeruginosa]	166.0	[0..1]	[207..1]
gi\|46362005 - gi\|46362005\|gb\|AAS89471.1\| chloramphenicol acetyltransferase [Acinetobacter baumannii]	165.0	[0..1]	[207..1]

Back

Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNYFETPFK GKPLSEQVKN PNIKVGRYSY YSGYYHGHSF DDCARYLLPD RDDVDKLIIG  60
   61 SFCSIGSGAS FIMAGNQGHR HDWVTSFPFF YMNEEPAFSE AVDTFQTTGD TVIGNDVWIG 120
  121 SEAMILPGVK VGHGAVIGSR ALVTKDVEPY TIVGGNPAKP IKKRFSEQEI SMLLEMAWWD 180
  181 WPLEQIEQAM PLLCSSDIAG LYRIWQSSNA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.69897
Match:	1xatA
Description:	STRUCTURE OF THE HEXAPEPTIDE XENOBIOTIC ACETYLTRANSFERASE FROM PSEUDOMONAS AERUGINOSA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.83213120696425	bayes_pls_golite062009
O-acyltransferase activity	1.71880487653974	bayes_pls_golite062009
O-acetyltransferase activity	1.31478733177395	bayes_pls_golite062009
transferase activity	0.819584274944333	bayes_pls_golite062009
acetyltransferase activity	0.80907457868323	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: