YRC Public Data Repository - Protein Structure Prediction

Protein:	SO1640
Organism:	Shewanella oneidensis
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO1640.

Description	E-value	Query Range	Subject Range
FABZ_SHESA - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella sp. (strain ANA-3) GN=fabZ PE=3 ...	197.0	[0..1]	[154..1]
FABZ_SHESR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella sp. (strain MR-7) GN=fabZ PE=3 S... FABZ_SHESM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella sp. (strain MR-4) GN=fabZ PE=3 S...	196.0	[0..1]	[154..1]
FABZ_SHESW - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella sp. (strain W3-18-1) GN=fabZ PE=... gi\|124509094, gi... - gi\|124547693\|ref\|ZP_01706549.1\| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Shewanella... FABZ_SHEPC - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella putrefaciens (strain CN-32 / ATC...	195.0	[0..1]	[154..1]
FABZ_SHEB9 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella baltica (strain OS195) GN=fabZ P... FABZ_SHEB5 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella baltica (strain OS155 / ATCC BAA... FABZ_SHEB8 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella baltica (strain OS185) GN=fabZ P... FABZ_SHEB2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella baltica (strain OS223) GN=fabZ P...	191.0	[0..1]	[154..1]
FABZ_PSEHT - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudoalteromonas haloplanktis (strain TAC ...	189.0	[0..1]	[151..1]
FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum GN=fabZ PE=3 SV=1 FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum (strain SS9) GN=fa...	189.0	[0..1]	[151..1]
gi\|90413540, gi\|... - gi\|90413540\|ref\|ZP_01221531.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium profundum 3TCK]...	189.0	[0..1]	[151..1]
FABZ_SHELP - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Shewanella loihica (strain ATCC BAA-1088 / ...	187.0	[0..1]	[154..1]
gi\|91191570, gi\|... - gi\|91223484\|ref\|ZP_01258749.1\| (3R)-hydroxymyristoyl ACP dehydratase [Vibrio alginolyticus 12G01], g...	187.0	[0..1]	[151..1]
FABZ_VIBTL - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio tasmaniensis (strain LGP32) GN=fabZ ... gi\|86146878, gi\|... - gi\|86146878\|ref\|ZP_01065197.1\| (3R)-hydroxymyristoyl ACP dehydratase [Vibrio sp. MED222], gi\|8583533...	186.0	[0..1]	[151..1]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQMNTMDI TEILKYLPHR YPFLLIDRVL DFTPGESLHA IKNVTINEPF FQGHFPIQPV  60
   61 MPGVLILEAM AQATGLLAFK TMSDDVPPPG VLYYFAGIDN ARFRRVVEPG DQIHFEVKMI 120
  121 KERRGIGVFY GEAKVDGEVV CSAEIMCARR EINQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: