YRC Public Data Repository - Protein Structure Prediction

Protein:	FIXC_ECOLI
Organism:	Escherichia coli
Length:	428 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FIXC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|134051145, gi... - gi\|88945736\|ref\|ZP_01148902.1\| flavoprotein [Desulfotomaculum reducens MI-1], gi\|88924707\|gb\|EAR4370...	255.0	[0..1]	[428..1]
gi\|209746978, gi... - pir\|\|F90634 flavoprotein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi\|... FIXC_ECO57 - Protein FixC OS=Escherichia coli O157:H7 GN=fixC PE=3 SV=1 gi\|254590580, gi... - gi\|254791180\|ref\|YP_003076017.1\| predicted oxidoreductase with FAD/NAD(P)-binding domain [Escherichi... gi\|208733211, gi... - gi\|208811934\|ref\|ZP_03253263.1\| protein FixC [Escherichia coli O157:H7 str. EC4045], gi\|208733211\|gb... gi\|208739787, gi... - gi\|208819664\|ref\|ZP_03259984.1\| protein FixC [Escherichia coli O157:H7 str. EC4042], gi\|208739787\|gb... gi\|209161176, gi... - gi\|209399776\|ref\|YP_002268651.1\| protein FixC [Escherichia coli O157:H7 str. EC4115], gi\|209161176\|g... gi\|217322428, gi... - gi\|217326207\|ref\|ZP_03442291.1\| protein FixC [Escherichia coli O157:H7 str. TW14588], gi\|217322428\|g... gi\|168785098, gi... - gi\|189374712\|gb\|EDU93128.1\| protein FixC [Escherichia coli O157:H7 str. EC869], gi\|168785098\|ref\|ZP_... gi\|168801928, gi... - gi\|189376021\|gb\|EDU94437.1\| protein FixC [Escherichia coli O157:H7 str. EC508], gi\|168801928\|ref\|ZP_... gi\|195937717 - gi\|195937717\|ref\|ZP_03083099.1\| putative oxidoreductase FixC [Escherichia coli O157:H7 str. EC4024] gi\|208727158, gi... - gi\|208807357\|ref\|ZP_03249694.1\| protein FixC [Escherichia coli O157:H7 str. EC4206], gi\|208727158\|gb... gi\|13359502, gi\|... - gi\|15829300\|ref\|NP_308073.1\| putative oxidoreductase FixC [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189366925, gi... - gi\|189366925\|gb\|EDU85341.1\| protein FixC [Escherichia coli O157:H7 str. EC4501], gi\|168762807\|ref\|ZP... gi\|189364063, gi... - gi\|189364063\|gb\|EDU82482.1\| protein FixC [Escherichia coli O157:H7 str. EC4486], gi\|168766735\|ref\|ZP... gi\|168776963, gi... - gi\|187767729\|gb\|EDU31573.1\| protein FixC [Escherichia coli O157:H7 str. EC4196], gi\|168776963\|ref\|ZP... gi\|168781744, gi... - gi\|189000675\|gb\|EDU69661.1\| protein FixC [Escherichia coli O157:H7 str. EC4076], gi\|168781744\|ref\|ZP... gi\|188014309, gi... - gi\|188014309\|gb\|EDU52431.1\| protein FixC [Escherichia coli O157:H7 str. EC4113], gi\|168751699\|ref\|ZP... gi\|189356112, gi... - gi\|189356112\|gb\|EDU74531.1\| protein FixC [Escherichia coli O157:H7 str. EC4401], gi\|168756871\|ref\|ZP...	250.0	[0..1]	[428..1]
gi\|117622334, gi... - gi\|117622334\|ref\|YP_851247.1\| putative oxidoreductase FixC [Escherichia coli APEC O1], gi\|115511458\|...	250.0	[0..1]	[428..1]
gi\|62178642, gi\|... - gi\|62178642\|ref\|YP_215059.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov...	250.0	[0..1]	[428..1]
gi\|213650462 - gi\|213650462\|ref\|ZP_03380515.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica se... gi\|213852501 - gi\|213852501\|ref\|ZP_03382033.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica se... gi\|214001263 - gi\|214001263\|ref\|ZP_03411998.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica se... FIXC_SALTI - Protein FixC OS=Salmonella typhi GN=fixC PE=3 SV=1 gi\|29136244, gi\|... - gi\|29140620\|ref\|NP_803962.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov... gi\|200388032, gi... - gi\|200388032\|ref\|ZP_03214644.1\| protein FixC [Salmonella enterica subsp. enterica serovar Virchow st... gi\|213051843 - gi\|213051843\|ref\|ZP_03344721.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica se... gi\|213427519 - gi\|213427519\|ref\|ZP_03360269.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica se... FIXC_SALTI - Protein fixC OS=Salmonella typhi GN=fixC PE=3 SV=1 gi\|16759070 - gi\|16759070\|ref\|NP_454687.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov...	250.0	[0..1]	[428..1]
gi\|56412349, gi\|... - gi\|56412349\|ref\|YP_149424.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica serov... gi\|197361286, gi... - gi\|197361286\|ref\|YP_002140921.1\| putative oxidoreductase FixC [Salmonella enterica subsp. enterica s...	250.0	[0..1]	[428..1]
gi\|209746980, gi... - gi\|209746980\|gb\|ACI71797.1\| flavoprotein [Escherichia coli], gi\|209746974\|gb\|ACI71794.1\| flavoprotei... gi\|74310663, gi\|... - gi\|74310663\|ref\|YP_309082.1\| putative oxidoreductase FixC [Shigella sonnei Ss046], gi\|73854140\|gb\|AA... gi\|75515631, gi\|... - gi\|75515631\|ref\|ZP_00737788.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli 53638], gi\|...	249.0	[0..1]	[428..1]
FIXC_SALTY - Protein FixC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=fixC PE=3 SV=1 FIXC_SALTY - Protein fixC OS=Salmonella typhimurium GN=fixC PE=3 SV=1 FIXC_SALTY - Protein fixC OS=Salmonella typhimurium GN=fixC PE=3 SV=1	249.0	[0..1]	[428..1]
gi\|15799726, gi\|... - gi\|15799726\|ref\|NP_285738.1\| putative oxidoreductase FixC [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|25303021 - pir\|\|F85485 flavoprotein, electron transport [imported] - Escherichia coli (strain O157:H7, substrai...	249.0	[0..1]	[428..1]
gi\|157156667, gi... - gi\|75189147\|ref\|ZP_00702414.1\| COG0644: Dehydrogenases (flavoproteins) [Escherichia coli E24377A], g...	248.0	[0..1]	[428..1]

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Predicted Domain #1

Region A:
Residues: [1-428]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEDIFDAII VGAGLAGSVA ALVLAREGAQ VLVIERGNSA GAKNVTGGRL YAHSLEHIIP  60
   61 GFADSAPVER LITHEKLAFM TEKSAMTMDY CNGDETSPSQ RSYSVLRSKF DAWLMEQAEE 120
  121 AGAQLITGIR VDNLVQRDGK VVGVEADGDV IEAKTVILAD GVNSILAEKL GMAKRVKPTD 180
  181 VAVGVKELIE LPKSVIEDRF QLQGNQGAAC LFAGSPTDGL MGGGFLYTNE NTLSLGLVCG 240
  241 LHHLHDAKKS VPQMLEDFKQ HPAVAPLIAG GKLVEYSAHV VPEAGINMLP ELVGDGVLIA 300
  301 GDAAGMCMNL GFTIRGMDLA IAAGEAAAKT VLSAMKSDDF SKQKLAEYRQ HLESGPLRDM 360
  361 RMYQKLPAFL DNPRMFSGYP ELAVGVARDL FTIDGSAPEL MRKKILRHGK KVGFINLIKD 420
  421 GMKGVTVL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2gmhA
Description:	No description for 2gmhA was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.501220963069211	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: