YRC Public Data Repository - Protein Structure Prediction

Protein:	SO3243
Organism:	Shewanella oneidensis
Length:	224 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SO3243.

Description	E-value	Query Range	Subject Range
FLGH_SHESR - Flagellar L-ring protein OS=Shewanella sp. (strain MR-7) GN=flgH PE=3 SV=1	305.0	[0..1]	[224..1]
gi\|78361462, gi\|... - gi\|78366417\|ref\|ZP_00836697.1\| Flagellar L-ring protein [Shewanella sp. PV-4], gi\|78361462\|gb\|EAP032...	295.0	[0..1]	[224..11]
FLGH_SHEAM - Flagellar L-ring protein OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=flgH PE=3 SV=1	295.0	[0..1]	[224..1]
FLGH_SHESA - Flagellar L-ring protein OS=Shewanella sp. (strain ANA-3) GN=flgH PE=3 SV=1	293.0	[0..1]	[224..1]
FLGH_PSEAB - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=flgH PE=3 SV=1	291.0	[0..1]	[224..1]
FLGH_SHESM - Flagellar L-ring protein OS=Shewanella sp. (strain MR-4) GN=flgH PE=3 SV=1	291.0	[0..1]	[224..1]
FLGH_SHEFN - Flagellar L-ring protein OS=Shewanella frigidimarina (strain NCIMB 400) GN=flgH PE=3 SV=1	291.0	[0..1]	[224..1]
FLGH_IDILO - Flagellar L-ring protein OS=Idiomarina loihiensis GN=flgH PE=3 SV=1 FLGH_IDILO - Flagellar L-ring protein OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=flgH ...	290.0	[0..1]	[224..1]
FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12... FLGH_PSEA8 - Flagellar L-ring protein OS=Pseudomonas aeruginosa (strain LESB58) GN=flgH PE=3 SV=1 gi\|194545204, gi... - gi\|84322075\|ref\|ZP_00970420.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... gi\|84328545, gi\|... - gi\|84328545\|ref\|ZP_00976549.1\| COG2063: Flagellar basal body L-ring protein [Pseudomonas aeruginosa ... FLGH_PSEAE - Flagellar L-ring protein OS=Pseudomonas aeruginosa GN=flgH PE=3 SV=1 gi\|107100528 - gi\|107100528\|ref\|ZP_01364446.1\| hypothetical protein PaerPA_01001553 [Pseudomonas aeruginosa PACS2]	290.0	[0..1]	[224..1]
gi\|49082006 - gi\|49082006\|gb\|AAT50403.1\| PA1083 [synthetic construct]	289.0	[0..1]	[224..1]

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Predicted Domain #1

Region A:
Residues: [1-224]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARYLLLAAA LLLTACSSTP KKPIADDPFY APVYPEAPPT KIAATGSIYQ DSQAASLYSD  60
   61 IRAHKVGDII TIVLKEATQA KKSAGNQIKK GSDMTLDPVY AGGSNLSLGG IPLDLRYKDS 120
  121 MNTKRESDAD QSNSLDGSIS ANIMQVLNNG NLVVRGEKWI SINNGDEFIR VTGIVRSQDI 180
  181 KPDNTIDSTR MANARIQYSG TGTFAEAQKV GWLSQFFMSD WWPF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits