YRC Public Data Repository - Protein Structure Prediction

Protein:	FLHE_YEREN
Organism:	Yersinia enterocolitica
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FLHE_YEREN.

Description	E-value	Query Range	Subject Range
gi\|77975733 - gi\|77975733\|ref\|ZP_00831267.1\| hypothetical protein YfreA_01000377 [Yersinia frederiksenii ATCC 3364...	200.0	[0..1]	[140..1]
gi\|77960288 - gi\|77960288\|ref\|ZP_00824167.1\| hypothetical protein YmolA_01003433 [Yersinia mollaretii ATCC 43969]	198.0	[0..1]	[140..1]
gi\|77979944 - gi\|77979944\|ref\|ZP_00835360.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	194.0	[0..1]	[140..1]
gi\|229897894, gi... - gi\|229897894\|ref\|ZP_04513045.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Orientalis ... gi\|229897168, gi... - gi\|229897168\|ref\|ZP_04512324.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Orientalis ... gi\|229701156, gi... - gi\|229896233\|ref\|ZP_04511403.1\| flagellar protein FlhE precursor [Yersinia pestis Pestoides A], gi\|2... gi\|108779076, gi... - gi\|108807163\|ref\|YP_651079.1\| flagellar protein FlhE precursor [Yersinia pestis Antiqua], gi\|1087790... gi\|165913351, gi... - gi\|89105481\|ref\|ZP_01178000.1\| hypothetical protein Ypesb_01000586 [Yersinia pestis biovar Orientali... gi\|165926012, gi... - gi\|165926012\|ref\|ZP_02221844.1\| flagellar protein FlhE [Yersinia pestis biovar Orientalis str. F1991... gi\|165990207, gi... - gi\|166010863\|ref\|ZP_02231761.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. E1979001... gi\|166211192, gi... - gi\|166211192\|ref\|ZP_02237227.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. B4200300... gi\|167400997, gi... - gi\|167400997\|ref\|ZP_02306500.1\| flagellar protein FlhE [Yersinia pestis biovar Antiqua str. UG05-045... gi\|167420366, gi... - gi\|167420366\|ref\|ZP_02312119.1\| flagellar protein FlhE [Yersinia pestis biovar Orientalis str. MG05-... gi\|25325926 - pir\|\|AF0218 flagellar protein FlhE precursor [imported] - Yersinia pestis (strain CO92) gi\|167055185, gi... - gi\|167425786\|ref\|ZP_02317539.1\| flagellar protein FlhE [Yersinia pestis biovar Mediaevalis str. K197... gi\|108776141, gi... - gi\|229902874\|ref\|ZP_04517991.1\| flagellar protein FlhE precursor [Yersinia pestis Nepal516], gi\|2296... gi\|167469707 - gi\|167469707\|ref\|ZP_02334411.1\| flagellar protein FlhE precursor [Yersinia pestis FV-1] gi\|45436278, gi\|... - gi\|45441417\|ref\|NP_992956.1\| flagellar protein FlhE precursor [Yersinia pestis biovar Microtus str. ... gi\|21959386, gi\|... - gi\|22126399\|ref\|NP_669822.1\| flagellar protein [Yersinia pestis KIM], gi\|21959386\|gb\|AAM86073.1\|AE01... gi\|149292672, gi... - gi\|149366259\|ref\|ZP_01888294.1\| flagellar protein FlhE precursor [Yersinia pestis CA88-4125], gi\|149... gi\|218928914, gi... - gi\|218928914\|ref\|YP_002346789.1\| flagellar protein FlhE precursor [Yersinia pestis CO92], gi\|1612204... gi\|145598620, gi... - gi\|145598620\|ref\|YP_001162696.1\| flagellar protein FlhE precursor [Yersinia pestis Pestoides F], gi\|...	187.0	[0..1]	[140..1]
gi\|153950066, gi... - gi\|77628866\|ref\|ZP_00791452.1\| hypothetical protein YpseI_01000188 [Yersinia pseudotuberculosis IP 3... gi\|170024655, gi... - gi\|170024655\|ref\|YP_001721160.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis YPIII], ... gi\|51596003, gi\|... - gi\|51596003\|ref\|YP_070194.1\| flagellar protein FlhE precursor [Yersinia pseudotuberculosis IP 32953]... gi\|186895106, gi... - gi\|186895106\|ref\|YP_001872218.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis PB1/+], ... gi\|12698842 - gi\|12698842\|gb\|AAK01702.1\|AF330138_1 flagella apparatus protein FlhE [Yersinia pseudotuberculosis]	185.0	[0..1]	[140..1]
gi\|77957059 - gi\|77957059\|ref\|ZP_00821126.1\| hypothetical protein YberA_01002724 [Yersinia bercovieri ATCC 43970]	185.0	[0..1]	[140..1]
gi\|75235318 - gi\|75235318\|ref\|ZP_00719544.1\| hypothetical protein EcolE1_01002870 [Escherichia coli E110019] gi\|75228741 - gi\|75228741\|ref\|ZP_00715354.1\| hypothetical protein EcolB7_01002972 [Escherichia coli B7A] gi\|75209445 - gi\|75209445\|ref\|ZP_00709673.1\| hypothetical protein EcolB_01003383 [Escherichia coli B171] gi\|253978033, gi... - gi\|254288726\|ref\|YP_003054474.1\| hypothetical protein ECD_01849 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973839, gi... - gi\|254161938\|ref\|YP_003045046.1\| hypothetical protein ECB_01849 [Escherichia coli B str. REL606], gi...	165.0	[0..19]	[140..4]
FLHE_ECOLI - Flagellar protein flhE precursor - Escherichia coli EG14013 - proton seal during flagellar secretion / Proton seal during flagellar secretion; periplasmic; bound ... gi\|187733152, gi... - gi\|75175729\|ref\|ZP_00695929.1\| hypothetical protein SboyB_01004194 [Shigella boydii BS512], gi\|18773... gi\|75256486 - gi\|75256486\|ref\|ZP_00728132.1\| hypothetical protein EcolE2_01003580 [Escherichia coli E22] gi\|81245053, gi\|... - gi\|82543642\|ref\|YP_407589.1\| flagellar protein [Shigella boydii Sb227], gi\|81245053\|gb\|ABB65761.1\| f... gi\|253773165, gi... - gi\|253773165\|ref\|YP_003035996.1\| flagellar FlhE family protein [Escherichia coli BL21(DE3)], gi\|2533... gi\|251785326, gi... - gi\|251785326\|ref\|YP_002999630.1\| hypothetical protein B21_01838 [Escherichia coli BL21], gi\|24237759... gi\|238901093, gi... - gi\|238901093\|ref\|YP_002926889.1\| hypothetical protein BWG_1692 [Escherichia coli BW2952], gi\|2388603... gi\|169889369, gi... - gi\|170081534\|ref\|YP_001730854.1\| hypothetical protein ECDH10B_2019 [Escherichia coli str. K-12 subst... gi\|157161349, gi... - gi\|157161349\|ref\|YP_001458667.1\| flagellar protein FlhE [Escherichia coli HS], gi\|157067029\|gb\|ABV06... gi\|188487722, gi... - gi\|188492523\|ref\|ZP_02999793.1\| flagellar protein FlhE [Escherichia coli 53638], gi\|188487722\|gb\|EDU... gi\|1736523, gi\|8... - gi\|89108718\|ref\|AP_002498.1\| flagellar protein [Escherichia coli str. K-12 substr. W3110], gi\|173652... gi\|209919304, gi... - gi\|209919304\|ref\|YP_002293388.1\| flagellar protein FlhE [Escherichia coli SE11], gi\|209912563\|dbj\|BA... EG14013 - proton seal during flagellar secretion / Proton seal during flagellar secretion; periplasmic; bound ... gi\|218361234, gi... - gi\|218554466\|ref\|YP_002387379.1\| hypothetical protein ECIAI1_1965 [Escherichia coli IAI1], gi\|218361... gi\|157079161, gi... - gi\|157157131\|ref\|YP_001463183.1\| flagellar protein FlhE [Escherichia coli E24377A], gi\|157079161\|gb\|... gi\|218352176, gi... - gi\|218695444\|ref\|YP_002403111.1\| hypothetical protein EC55989_2057 [Escherichia coli 55989], gi\|2183...	164.0	[0..21]	[140..14]
gi\|75239702 - gi\|75239702\|ref\|ZP_00723665.1\| hypothetical protein EcolF_01002899 [Escherichia coli F11]	164.0	[0..19]	[140..4]
gi\|49611158, gi\|... - gi\|50120632\|ref\|YP_049799.1\| flagellar protein [Pectobacterium atrosepticum SCRI1043], gi\|49611158\|e...	163.0	[0..7]	[140..2]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTCLSRRVL VGLFSIGILP LNAMASGSWV ADDIGITQSV RGVAISAKPL QSPVALAQDN  60
   61 ARIVSISWRY QLMSAAPDGL QVKLCTPTRC MPLEGGSGLS RGLAGEAAAT QLTFIYFIAG 120
  121 KGRVNPPLQV INHQVIVNYR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	91.251812
Match:	PF06366.4
Description:	No description for PF06366.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits