YRC Public Data Repository - Protein Structure Prediction

Protein:	SRA_SALCH
Organism:	Salmonella choleraesuis
Length:	47 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SRA_SALCH.

Description	E-value	Query Range	Subject Range
SRA_ECOL6 - Stationary-phase-induced ribosome-associated protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC... EG11508 - stationary-phase-induced ribosome-associated protein / SRA (stationary-phase-induced ribosome-associ... gi\|188016705, gi... - gi\|188016705\|gb\|EDU54827.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4113]... SRA_ECO57 - Stationary-phase-induced ribosome-associated protein OS=Escherichia coli O157:H7 GN=sra PE=3 SV=1 gi\|12515201, gi\|... - gi\|15801657\|ref\|NP_287675.1\| 30S ribosomal subunit S22 [Escherichia coli O157:H7 EDL933], gi\|1251520... gi\|226900217, gi... - gi\|237705460\|ref\|ZP_04535941.1\| stationary-phase-induced ribosome-associated protein [Escherichia sp... gi\|227836883, gi... - gi\|227886126\|ref\|ZP_04003931.1\| 30S ribosomal subunit S22 [Escherichia coli 83972], gi\|227836883\|gb\|... gi\|251784959, gi... - gi\|251784959\|ref\|YP_002999263.1\| hypothetical protein B21_01450 [Escherichia coli BL21], gi\|24237723... gi\|238900702, gi... - gi\|238900702\|ref\|YP_002926498.1\| 30S ribosomal subunit protein S22 [Escherichia coli BW2952], gi\|238... gi\|254161538, gi... - gi\|254161538\|ref\|YP_003044646.1\| 30S ribosomal subunit protein S22 [Escherichia coli B str. REL606],... gi\|253773549, gi... - gi\|254288343\|ref\|YP_003054091.1\| 30S ribosomal subunit protein S22 [Escherichia coli BL21(DE3)], gi\|... gi\|124526257, gi... - gi\|124526257\|ref\|ZP_01698262.1\| 30S ribosomal subunit S22 [Escherichia coli B], gi\|124502361\|gb\|EAY4... gi\|254592426, gi... - gi\|254793026\|ref\|YP_003077863.1\| 30S ribosomal subunit protein S22 [Escherichia coli O157:H7 str. TW... EG11508 - stationary-phase-induced ribosome-associated protein / SRA (stationary-phase-induced ribosome-associ... gi\|85674985, gi\|... - gi\|89108323\|ref\|AP_002103.1\| 30S ribosomal subunit protein S22 [Escherichia coli str. K-12 substr. W... SRA_SHIBS - Stationary-phase-induced ribosome-associated protein OS=Shigella boydii serotype 4 (strain Sb227) GN... SRA_SHISS - Stationary-phase-induced ribosome-associated protein OS=Shigella sonnei (strain Ss046) GN=sra PE=3 S... SRA_ECOUT - Stationary-phase-induced ribosome-associated protein OS=Escherichia coli (strain UTI89 / UPEC) GN=sr... gi\|15831338, gi\|... - gi\|15831338\|ref\|NP_310111.1\| 30S ribosomal subunit S22 [Escherichia coli O157:H7 str. Sakai], gi\|133... SRA_ECOL5 - Stationary-phase-induced ribosome-associated protein OS=Escherichia coli O6:K15:H31 (strain 536 / UP... RS22_ECOLI - 30S ribosomal protein S22 (Stationary-phase-induced ribosome-associated protein) (SRA) (Protein D) -... gi\|188491183, gi... - gi\|188495984\|ref\|ZP_03003254.1\| 30S ribosomal protein, S22 family [Escherichia coli 53638], gi\|18849... gi\|187427950, gi... - gi\|187730958\|ref\|YP_001880317.1\| 30S ribosomal protein, S22 family [Shigella boydii CDC 3083-94], gi... gi\|170519968, gi... - gi\|170682250\|ref\|YP_001743748.1\| 30S ribosomal subunit S24 [Escherichia coli SMS-3-5], gi\|170519968\|... gi\|170081151, gi... - gi\|170081151\|ref\|YP_001730471.1\| 30S ribosomal subunit protein S22 [Escherichia coli str. K-12 subst... gi\|157066636, gi... - gi\|157160956\|ref\|YP_001458274.1\| 30S ribosomal subunit S22 [Escherichia coli HS], gi\|157066636\|gb\|AB... gi\|192959473, gi... - gi\|193066883\|ref\|ZP_03047852.1\| 30S ribosomal protein, S22 family [Escherichia coli E110019], gi\|192... gi\|157156400, gi... - gi\|157156400\|ref\|YP_001462751.1\| 30S ribosomal subunit S22 [Escherichia coli E24377A], gi\|157078430\|... gi\|193064290, gi... - gi\|193064290\|ref\|ZP_03045373.1\| 30S ribosomal protein, S22 family [Escherichia coli E22], gi\|1929291... gi\|190906865, gi... - gi\|191172859\|ref\|ZP_03034395.1\| 30S ribosomal protein, S22 family [Escherichia coli F11], gi\|1909068... gi\|190904760, gi... - gi\|191164988\|ref\|ZP_03026832.1\| 30S ribosomal protein, S22 family [Escherichia coli B7A], gi\|1909047... gi\|187770027, gi... - gi\|187770027\|gb\|EDU33871.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4196]... gi\|189361876, gi... - gi\|189361876\|gb\|EDU80295.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4486]... gi\|189368135, gi... - gi\|189368135\|gb\|EDU86551.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4501]... gi\|168756129, gi... - gi\|189356720\|gb\|EDU75139.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4401]... gi\|169755117, gi... - gi\|170020189\|ref\|YP_001725143.1\| 30S ribosomal subunit S22 [Escherichia coli ATCC 8739], gi\|16975511... gi\|189378143, gi... - gi\|189378143\|gb\|EDU96559.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC508],... gi\|168788460, gi... - gi\|189371766\|gb\|EDU90182.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC869],... gi\|168781459, gi... - gi\|189000847\|gb\|EDU69833.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4076]... gi\|217317848, gi... - gi\|217329409\|ref\|ZP_03445489.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. TW1... SRA_ECOL6, RS22_... - Stationary-phase-induced ribosome-associated protein OS=Escherichia coli O6 GN=sra PE=3 SV=1, 30S ri... gi\|215486706, gi... - gi\|215486706\|ref\|YP_002329137.1\| 30S ribosomal subunit S22 [Escherichia coli O127:H6 str. E2348/69],... gi\|209918760, gi... - gi\|209918760\|ref\|YP_002292844.1\| 30S ribosomal subunit S22 [Escherichia coli SE11], gi\|209912019\|dbj... gi\|195936973 - gi\|195936973\|ref\|ZP_03082355.1\| 30S ribosomal subunit S22 [Escherichia coli O157:H7 str. EC4024] gi\|194436527, gi... - gi\|194436527\|ref\|ZP_03068628.1\| 30S ribosomal protein, S22 family [Escherichia coli 101-1], gi\|19442... gi\|194431987, gi... - gi\|194431987\|ref\|ZP_03064277.1\| 30S ribosomal protein, S22 family [Shigella dysenteriae 1012], gi\|19... gi\|194425838, gi... - gi\|194425838\|ref\|ZP_03058394.1\| 30S ribosomal protein, S22 family [Escherichia coli B171], gi\|194415... gi\|209158531, gi... - gi\|209397131\|ref\|YP_002270482.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC... gi\|208820272, gi... - gi\|208820272\|ref\|ZP_03260592.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4... gi\|208815897, gi... - gi\|208815897\|ref\|ZP_03257076.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4... gi\|208724575, gi... - gi\|208811069\|ref\|ZP_03252902.1\| 30S ribosomal protein, S22 family [Escherichia coli O157:H7 str. EC4...	66.0	[0..1]	[44..1]

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Predicted Domain #1

Region A:
Residues: [1-47]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNRQARHI LGLDYRISNQ RKVVTEGDTS SVVNNPTGRK RRADSQK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits