YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149292672, gi...
Organism:	Yersinia pestis CA88-4125
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149292672, gi....

Description	E-value	Query Range	Subject Range
gi\|153950066, gi... - gi\|77628866\|ref\|ZP_00791452.1\| hypothetical protein YpseI_01000188 [Yersinia pseudotuberculosis IP 3... gi\|170024655, gi... - gi\|170024655\|ref\|YP_001721160.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis YPIII], ... gi\|51596003, gi\|... - gi\|51596003\|ref\|YP_070194.1\| flagellar protein FlhE precursor [Yersinia pseudotuberculosis IP 32953]... gi\|186895106, gi... - gi\|186895106\|ref\|YP_001872218.1\| flagellar FlhE family protein [Yersinia pseudotuberculosis PB1/+], ... gi\|12698842 - gi\|12698842\|gb\|AAK01702.1\|AF330138_1 flagella apparatus protein FlhE [Yersinia pseudotuberculosis]	2.0E-53	[1..140]	[1..140]
FLHE_YEREN - Flagellar protein FlhE OS=Yersinia enterocolitica GN=flhE PE=3 SV=1	1.0E-47	[1..140]	[1..140]
gi\|77975733 - gi\|77975733\|ref\|ZP_00831267.1\| hypothetical protein YfreA_01000377 [Yersinia frederiksenii ATCC 3364...	2.0E-42	[1..140]	[1..140]
gi\|77960288 - gi\|77960288\|ref\|ZP_00824167.1\| hypothetical protein YmolA_01003433 [Yersinia mollaretii ATCC 43969]	4.0E-42	[1..140]	[1..140]
gi\|167994218, gi... - gi\|205327882\|gb\|EDZ14646.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar 4,[5... gi\|167552448, gi... - gi\|205322930\|gb\|EDZ10769.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Sain... gi\|205350653, gi... - gi\|205350653\|gb\|EDZ37284.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Hada... gi\|168241545, gi... - gi\|205339682\|gb\|EDZ26446.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Heid... gi\|168238546, gi... - gi\|197288662\|gb\|EDY28037.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Schw... FLHE_SALTY - Flagellar protein flhE OS=Salmonella typhimurium GN=flhE PE=1 SV=1 gi\|205331998, gi... - gi\|205331998\|gb\|EDZ18762.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Kent... gi\|213163287 - gi\|213163287\|ref\|ZP_03348997.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|206708370, gi... - gi\|207856567\|ref\|YP_002243218.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|205272163, gi... - gi\|205352382\|ref\|YP_002226183.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|204931000, gi... - gi\|204931000\|ref\|ZP_03221826.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... gi\|213649608 - gi\|213649608\|ref\|ZP_03379661.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213622665 - gi\|213622665\|ref\|ZP_03375448.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213583151 - gi\|213583151\|ref\|ZP_03364977.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|213426387 - gi\|213426387\|ref\|ZP_03359137.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|194405871, gi... - gi\|194447567\|ref\|YP_002045966.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|194442967, gi... - gi\|194442967\|ref\|YP_002041178.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|205342735, gi... - gi\|205342735\|gb\|EDZ29499.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Welt... gi\|195633928, gi... - gi\|195633928\|gb\|EDX52280.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar Newp... gi\|198244044, gi... - gi\|198244044\|ref\|YP_002215171.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|197261641, gi... - gi\|197261641\|ref\|ZP_03161715.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... gi\|194737915, gi... - gi\|194737915\|ref\|YP_002114948.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar... gi\|238912510 - gi\|238912510\|ref\|ZP_04656347.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|194472694, gi... - gi\|194472694\|ref\|ZP_03078678.1\| flagellar protein FlhE [Salmonella enterica subsp. enterica serovar ... FLHE_SALTI - Flagellar protein flhE OS=Salmonella typhi GN=flhE PE=3 SV=1 FLHE_SALTI - Flagellar protein FlhE OS=Salmonella typhi GN=flhE PE=3 SV=1 gi\|224468111, gi... - gi\|224583584\|ref\|YP_002637382.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... FLHE_SALTY - Flagellar protein FlhE OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=flhE PE=1 ... gi\|213999606 - gi\|213999606\|ref\|ZP_03410341.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|29141447, gi\|... - gi\|29141447\|ref\|NP_804789.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s... gi\|213976806 - gi\|213976806\|ref\|ZP_03404065.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... gi\|16760861 - gi\|16760861\|ref\|NP_456478.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s... gi\|213857335 - gi\|213857335\|ref\|ZP_03384306.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=flhE] [protein=flagellar protein] [protein_id=YP_005237879.1] [location=complement(2019224..20... gi\|62128122, gi\|... - gi\|62180489\|ref\|YP_216906.1\| flagellar protein [Salmonella enterica subsp. enterica serovar Cholerae... FLHE_SALTY - Flagellar protein flhE OS=Salmonella typhimurium GN=flhE PE=1 SV=1	1.0E-41	[13..140]	[5..130]
gi\|77979944 - gi\|77979944\|ref\|ZP_00835360.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	2.0E-41	[1..140]	[1..140]
gi\|75235318 - gi\|75235318\|ref\|ZP_00719544.1\| hypothetical protein EcolE1_01002870 [Escherichia coli E110019] gi\|75228741 - gi\|75228741\|ref\|ZP_00715354.1\| hypothetical protein EcolB7_01002972 [Escherichia coli B7A] gi\|75209445 - gi\|75209445\|ref\|ZP_00709673.1\| hypothetical protein EcolB_01003383 [Escherichia coli B171] gi\|253978033, gi... - gi\|254288726\|ref\|YP_003054474.1\| hypothetical protein ECD_01849 [Escherichia coli BL21(DE3)], gi\|253... gi\|253973839, gi... - gi\|254161938\|ref\|YP_003045046.1\| hypothetical protein ECB_01849 [Escherichia coli B str. REL606], gi...	2.0E-41	[17..140]	[1..122]
gi\|197362094, gi... - gi\|197362094\|ref\|YP_002141731.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enteri... gi\|56127425, gi\|... - gi\|56413168\|ref\|YP_150243.1\| flagellar protein FlhE precursor [Salmonella enterica subsp. enterica s...	3.0E-41	[13..140]	[5..130]
gi\|68527273, gi\|... - gi\|94312635\|ref\|YP_585844.1\| flagellar FlhE [Ralstonia metallidurans CH34], gi\|93356487\|gb\|ABF10575....	5.0E-41	[21..140]	[29..148]
gi\|77957059 - gi\|77957059\|ref\|ZP_00821126.1\| hypothetical protein YberA_01002724 [Yersinia bercovieri ATCC 43970]	6.0E-41	[1..140]	[1..140]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIRASHRVL ILLATSLLPL KINAASGSWV ADNIGITQGL RGVVTPSSPL QPPVALAQEN  60
   61 ARIVSVGWRY QLMSTAPDGL QVKLCTPTRC IPLEGGSGQS VGLAGEAAVN QLTFVYFIAG 120
  121 KGRVNPPLQV ISNQVLVNYR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	73.0
Match:	PF06366.4
Description:	No description for PF06366.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits