YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|148875887, gi...
Organism:	Vibrio cholerae 623-39
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|148875887, gi....

Description	E-value	Query Range	Subject Range
FLAG_VIBPA - Protein FlaG OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=flaG PE=4 SV=2 FLAG_VIBPA - Protein flaG OS=Vibrio parahaemolyticus GN=flaG PE=4 SV=2	154.0	[0..1]	[153..1]
gi\|551514 - gi\|551514\|gb\|AAC27802.1\| FlaG [Vibrio parahaemolyticus] gi\|153837009, gi... - gi\|153837009\|ref\|ZP_01989676.1\| FlaG [Vibrio parahaemolyticus AQ3810], gi\|149749782\|gb\|EDM60527.1\| F...	153.0	[0..1]	[153..1]
gi\|37199423, gi\|... - gi\|37680674\|ref\|NP_935283.1\| flagellar protein FlaG [Vibrio vulnificus YJ016], gi\|37199423\|dbj\|BAC95... gi\|27365272, gi\|... - gi\|27365272\|ref\|NP_760800.1\| flagellar protein FlaG [Vibrio vulnificus CMCP6], gi\|27361419\|gb\|AAO103...	149.0	[0..1]	[153..1]
gi\|91191622, gi\|... - gi\|91223536\|ref\|ZP_01258801.1\| flagellar protein FlaG [Vibrio alginolyticus 12G01], gi\|91191622\|gb\|E...	141.0	[0..1]	[153..1]
gi\|75856762, gi\|... - gi\|75856762\|ref\|ZP_00764385.1\| COG1334: Uncharacterized flagellar protein FlaG [Vibrio sp. Ex25], gi...	139.0	[0..1]	[153..1]
FLAG_VIBAN - Protein FlaG (Fragment) OS=Vibrio anguillarum GN=flaG PE=4 SV=1	135.0	[0..1]	[145..1]
gi\|86146144, gi\|... - gi\|86146144\|ref\|ZP_01064470.1\| flagellar protein FlaG [Vibrio sp. MED222], gi\|85836091\|gb\|EAQ54223.1...	115.0	[0..1]	[153..1]
gi\|84388103, gi\|... - gi\|84388103\|ref\|ZP_00990999.1\| flagellar protein FlaG [Vibrio splendidus 12B01], gi\|84377170\|gb\|EAP9...	115.0	[0..1]	[145..1]
gi\|22778188, gi\|... - gi\|23099957\|ref\|NP_693423.1\| flagellar protein FlaG [Oceanobacillus iheyensis HTE831], gi\|22778188\|d...	105.0	[0..29]	[152..3]
gi\|46912533, gi\|... - gi\|54308107\|ref\|YP_129127.1\| flagellar protein FlaG [Photobacterium profundum SS9], gi\|46912533\|emb\|...	104.0	[0..7]	[153..9]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIPSYASNI QPYGSQSGTK IASENDNAKS VSLSGDNSRS VSRTDKLSEH FSEQVRARQQ  60
   61 ESAETAMAQA KQRQRLNEEQ LAKMVEQMNE FVKSINKGLS FRLDRESGRE VVTIYEASTG 120
  121 DIIRQIPEEE MLEVLRRLAR EQDHRSGLLM AKV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.045757
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits