YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149288924, gi...
Organism:	Yersinia pestis CA88-4125
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149288924, gi....

Description	E-value	Query Range	Subject Range
gi\|60468186 - gi\|60468186\|gb\|EAL66196.1\| hypothetical protein DDB0204910 [Dictyostelium discoideum] gi\|66812030, gi\|... - gi\|66812030\|ref\|XP_640194.1\| hypothetical protein [Dictyostelium discoideum AX4], gi\|60468186\|gb\|EAL...	9.0E-32	[6..293]	[213..508]
gi\|77974005 - gi\|77974005\|ref\|ZP_00829548.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	1.0E-29	[1..319]	[1..319]
gi\|111619247, gi... - gi\|111619247\|ref\|ZP_01406261.1\| Protein of unknown function DUF6, transmembrane [Acidovorax avenae s...	2.0E-29	[23..302]	[420..697]
gi\|28829841 - gi\|28829841\|gb\|AAO52343.1\| similar to Arabidopsis thaliana (Mouse-ear cress). Hypothetical 38.7 kDa ...	1.0E-28	[8..324]	[24..347]
gi\|37528410, gi\|... - gi\|37528410\|ref\|NP_931755.1\| hypothetical protein plu4591 [Photorhabdus luminescens subsp. laumondii...	3.0E-28	[2..307]	[8..310]
gi\|238793008, gi... - gi\|77977594\|ref\|ZP_00833038.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	4.0E-28	[1..321]	[1..321]
gi\|77961855 - gi\|77961855\|ref\|ZP_00825684.1\| COG0697: Permeases of the drug/metabolite transporter (DMT) superfami...	9.0E-28	[1..312]	[1..312]
gi\|89084144, gi\|... - gi\|89101143\|ref\|ZP_01173977.1\| transporter, EamA family protein [Bacillus sp. NRRL B-14911], gi\|8908...	2.0E-27	[7..323]	[27..333]
gi\|76811648, gi\|... - gi\|76811648\|ref\|YP_331952.1\| hypothetical protein BURPS1710b_0539 [Burkholderia pseudomallei 1710b],...	2.0E-27	[2..278]	[213..483]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTKQQAGLG IFLALTTAVF WGALPIAMKQ VLEVMEPFTI VWYRFMMAAI GLGIILASRR  60
   61 QLPSLKLFRQ RRWLALLIIA TCGLLGNFIF FSSSLQYLSP TTSQVIGQLS PVGMMVASVL 120
  121 VLKERMRITQ VIGAGMLICG LLLFFNTS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.79588
Match:	PF00892.11
Description:	No description for PF00892.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [149-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHEIFTRLTD YTLGVALGVC AAVVWVSYGV AQKVLLRRMA SQQILLLLYT LCAIALFPLA  60
   61 KPAVIFQLSG WQFACLLFCG VNTLVGYGAL AEAMARWQAA QVSALITLTP LFTLFFSILL 120
  121 ALAWPDMFAA PSLNLVGYAG AFVVVAGAMF SAIGHRWWPR RTEINLVALQ KQPVNDLRRK 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.24
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits