YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151944565
Organism:	Saccharomyces cerevisiae YJM789
Length:	153 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151944565.

Description	E-value	Query Range	Subject Range
RT12_YEAST - 37S ribosomal protein S12, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN... gi\|190408965 - gi\|190408965\|gb\|EDV12230.1\| 30S ribosomal protein S12 [Saccharomyces cerevisiae RM11-1a] MRPS12 - Mitochondrial protein; may interact with ribosomes based on co-purification experiments; similar to ... gi\|151944565 - gi\|151944565\|gb\|EDN62843.1\| conserved protein [Saccharomyces cerevisiae YJM789]	8.0E-54	[1..153]	[1..153]
RT12_OENEH - 40S ribosomal protein S12, mitochondrial OS=Oenothera elata subsp. hookeri GN=RPS12 PE=2 SV=1	4.0E-53	[8..153]	[44..188]
RR12_MARPO - 30S ribosomal protein S12, chloroplastic OS=Marchantia polymorpha GN=rps12 PE=3 SV=1	2.0E-49	[28..151]	[1..123]
gi\|15889246, gi\|... - gi\|15889246\|ref\|NP_354927.1\| 30S ribosomal protein S12 [Agrobacterium tumefaciens str. C58], gi\|1515... gi\|25294702 - gi\|25294702\|pir\|\|G97594 hypothetical protein AGR_C_3561 [imported] - Agrobacterium tumefaciens (stra...	3.0E-49	[14..151]	[1..136]
RS12_RALPJ - 30S ribosomal protein S12 OS=Ralstonia pickettii (strain 12J) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum (strain GMI1000) GN=rpsL PE=3 SV=1 RS12_RALSO - 30S ribosomal protein S12 OS=Ralstonia solanacearum GN=rpsL PE=3 SV=1 gi\|207744582, gi... - gi\|207744582\|ref\|YP_002260974.1\| 30s ribosomal protein s12 [Ralstonia solanacearum IPO1609], gi\|2065... gi\|206587073, gi... - gi\|207721904\|ref\|YP_002252342.1\| 30s ribosomal protein s12 [Ralstonia solanacearum MolK2], gi\|206587... gi\|83749346, gi\|... - gi\|83749346\|ref\|ZP_00946342.1\| SSU ribosomal protein S12P [Ralstonia solanacearum UW551], gi\|8372397... gi\|241664537, gi... - gi\|241664537\|ref\|YP_002982897.1\| ribosomal protein S12 [Ralstonia pickettii 12D], gi\|240866564\|gb\|AC...	3.0E-49	[28..153]	[1..125]
RR12_GUITH - 30S ribosomal protein S12, chloroplastic OS=Guillardia theta GN=rps12 PE=3 SV=1	3.0E-49	[28..152]	[1..123]
RS12_AQUAE - 30S ribosomal protein S12 OS=Aquifex aeolicus GN=rpsL1 PE=3 SV=1 RS12_AQUAE - 30S ribosomal protein S12 OS=Aquifex aeolicus (strain VF5) GN=rpsL1 PE=3 SV=1	5.0E-49	[28..152]	[1..124]
RS12_SPIPL - (P13576) 30S ribosomal protein S12 RS12_ARTPT - 30S ribosomal protein S12 OS=Arthrospira platensis GN=rpsL PE=3 SV=1	5.0E-49	[28..151]	[1..123]
gi\|25294704 - gi\|25294704\|pir\|\|AB3346 SSU ribosomal protein S12P [imported] - Brucella melitensis (strain 16M) gi\|17982691, gi\|... - gi\|17987035\|ref\|NP_539669.1\| 30S ribosomal protein S12 [Brucella melitensis 16M], gi\|17982691\|gb\|AAL...	8.0E-49	[19..151]	[3..134]
RR12_NASOF - 30S ribosomal protein S12, chloroplastic OS=Nasturtium officinale GN=rps12-A PE=3 SV=1 RR12_LEPVR - 30S ribosomal protein S12, chloroplastic OS=Lepidium virginicum GN=rps12-A PE=3 SV=1 gi\|166065420, gi... - gi\|189162334\|ref\|YP_001936496.1\| ribosomal protein S12 [Fagopyrum esculentum subsp. ancestrale], gi\|... RR12_LOBMA - 30S ribosomal protein S12, chloroplastic OS=Lobularia maritima GN=rps12-A PE=3 SV=1 gi\|160369876, gi... - gi\|161622333\|ref\|YP_001586205.1\| ribosomal protein S12 [Acorus americanus], gi\|161622289\|ref\|YP_0015... RR12_DRANE - 30S ribosomal protein S12, chloroplastic OS=Draba nemorosa GN=rps12 PE=3 SV=1 RR12_CUCSA - 30S ribosomal protein S12, chloroplastic OS=Cucumis sativus GN=rps12-A PE=3 SV=1 RR12A_OLIPU - 30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila GN=rps12-A PE=3 SV=1 RR12_NICSY - 30S ribosomal protein S12, chloroplastic OS=Nicotiana sylvestris GN=rps12-A PE=3 SV=1 RR12_PIPCE - 30S ribosomal protein S12, chloroplastic OS=Piper cenocladum GN=rps12-A PE=3 SV=1 RR12_NICTO - 30S ribosomal protein S12, chloroplastic OS=Nicotiana tomentosiformis GN=rps12-A PE=3 SV=1 RR12_ACOCL - 30S ribosomal protein S12, chloroplastic OS=Acorus calamus GN=rps12-A PE=3 SV=1 RR12_CRUWA - 30S ribosomal protein S12, chloroplastic OS=Crucihimalaya wallichii GN=rps12-A PE=3 SV=1 RR12_TOBAC - 30S ribosomal protein S12, chloroplastic OS=Nicotiana tabacum GN=rps12-A PE=1 SV=2 RR12_CAPBU - 30S ribosomal protein S12, chloroplastic OS=Capsella bursa-pastoris GN=rps12-A PE=3 SV=1 RR12_NICPL - 30S ribosomal protein S12, chloroplastic OS=Nicotiana plumbaginifolia GN=rps12 PE=1 SV=2 RR12_SPIOL - 30S ribosomal protein S12, chloroplastic OS=Spinacia oleracea GN=rps12-A PE=1 SV=2 RR12_ARATH - 30S ribosomal protein S12, chloroplastic OS=Arabidopsis thaliana GN=rps12-A PE=2 SV=2 RR12_BARVE - 30S ribosomal protein S12, chloroplastic OS=Barbarea verna GN=rps12-A PE=3 SV=1 RR12_AETCO - 30S ribosomal protein S12, chloroplastic OS=Aethionema cordifolium GN=rps12-A PE=3 SV=1 RR12_AETGR - 30S ribosomal protein S12, chloroplastic OS=Aethionema grandiflorum GN=rps12-A PE=3 SV=1	9.0E-49	[28..151]	[1..123]

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Predicted Domain #1

Region A:
Residues: [1-153]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRFMSNTW CTPLRQAQRL FSSTTTMQAT LNQIKRGSGP PRRKKISTAP QLDQCPQRKG  60
   61 VVLRVMVLKP KKPNSAQRKA CRVRLTNGNV VSAYIPGEGH DAQEHSIVYV RGGRCQDLPG 120
  121 VKYHVIRGAG DLSGVVNRIS SRSKYGAKKP SKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	326.522879
Match:	1l1uL_
Description:	No description for 1l1uL_ was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	7.45319063235379	bayes_pls_golite062009
structural molecule activity	6.87843523680097	bayes_pls_golite062009
misfolded RNA binding	4.4877915495248	bayes_pls_golite062009
nucleic acid binding	3.7132569326175	bayes_pls_golite062009
RNA binding	3.30183895019873	bayes_pls_golite062009
DNA binding	2.94486937698231	bayes_pls_golite062009
	2.80746531284205	bayes_pls_golite062009
binding	2.40532042551671	bayes_pls_golite062009
mRNA binding	1.65819015373151	bayes_pls_golite062009
translation regulator activity	1.46320772716954	bayes_pls_golite062009
translation factor activity, nucleic acid binding	1.40718318783582	bayes_pls_golite062009
translation initiation factor activity	1.27539679024898	bayes_pls_golite062009
transcription regulator activity	1.24522359765541	bayes_pls_golite062009
protein binding	1.20309946451799	bayes_pls_golite062009
structure-specific DNA binding	1.10289736160471	bayes_pls_golite062009
single-stranded DNA binding	0.96886436248958	bayes_pls_golite062009
ribonuclease activity	0.91658673456122	bayes_pls_golite062009
transcription factor activity	0.672797026326101	bayes_pls_golite062009
transcription activator activity	0.581984534552921	bayes_pls_golite062009
aminoacyl-tRNA ligase activity	0.474251377131502	bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds	0.47336621289748	bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds	0.47336621289748	bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters	0.438266295385131	bayes_pls_golite062009
exoribonuclease activity	0.39131721416336	bayes_pls_golite062009
sequence-specific DNA binding	0.3506031439435	bayes_pls_golite062009
nuclease activity	0.17660139576327	bayes_pls_golite062009
RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
DNA-directed RNA polymerase activity	0.1542034177713	bayes_pls_golite062009
transcription factor binding	0.132487446755259	bayes_pls_golite062009
3'-5'-exoribonuclease activity	0.0717589400404304	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: