YRC Public Data Repository - Protein Structure Prediction

Protein:	GON1_HAPBU
Organism:	Haplochromis burtoni
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_HAPBU.

Description	E-value	Query Range	Subject Range
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	150.0	[0..1]	[94..1]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	142.0	[0..1]	[94..1]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	141.0	[0..1]	[94..1]
GON1_PAGMA - Progonadoliberin-1 OS=Pagrus major GN=gnrh1 PE=3 SV=1	138.0	[0..1]	[94..1]
gi\|57471989 - gi\|57471989\|gb\|AAW51121.1\| pejerrey-type gonadotropin-releasing hormone precursor [Monopterus albus]	135.0	[0..1]	[94..5]
gi\|67937409 - gi\|67937409\|gb\|AAY83273.1\| seabream-type gonadotropin-releasing hormone [Paralichthys olivaceus]	135.0	[0..1]	[94..5]
gi\|905399, gi\|21... - gi\|905399\|gb\|AAC59691.1\| gonadotropin-releasing hormone [Haplochromis burtoni], pir\|\|I50739 gonadotr...	133.0	[0..1]	[89..1]
gi\|34872165 - gi\|34872165\|gb\|AAQ83269.1\| seabream-type gonadotropin-releasing hormone preproprotein [Mugil cephalu...	133.0	[0..1]	[94..1]
GON1_VERMO - Progonadoliberin-1 OS=Verasper moseri GN=gnrh1 PE=2 SV=1	124.0	[0..1]	[88..5]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKILALWL LLAGTVFPQG CCQHWSYGLS PGGKRDLDNF SDTLGNMVEE FPRVEAPCSV  60
   61 FGCAEESPFA KMYRVKGLLA SVAERENGHR TFKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.986
Match:	1t3jA
Description:	Mitofusin domain HR2 V686M/I708M mutant
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits