YRC Public Data Repository - Protein Structure Prediction

Protein:	GON1_PAGMA
Organism:	Pagrus major
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_PAGMA.

Description	E-value	Query Range	Subject Range
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2	143.0	[0..1]	[95..1]
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	142.0	[0..1]	[95..1]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	141.0	[0..1]	[95..1]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	137.0	[0..1]	[95..1]
gi\|57471989 - gi\|57471989\|gb\|AAW51121.1\| pejerrey-type gonadotropin-releasing hormone precursor [Monopterus albus]	133.0	[0..1]	[95..5]
gi\|67937409 - gi\|67937409\|gb\|AAY83273.1\| seabream-type gonadotropin-releasing hormone [Paralichthys olivaceus]	129.0	[0..1]	[95..5]
gi\|34872165 - gi\|34872165\|gb\|AAQ83269.1\| seabream-type gonadotropin-releasing hormone preproprotein [Mugil cephalu...	126.0	[0..1]	[95..1]
gi\|50659036 - gi\|50659036\|gb\|AAT80331.1\| seabream-type gonadotropin-releasing hormone precursor [Sciaenops ocellat...	121.0	[0..1]	[95..1]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPQTSNLWL LLVVMMVMSQ GCCQHWSYGL SPGGKRDLDS LSDTLGDIIE RFPHADSPCS  60
   61 VLGCAEEPPF PKMYRMKGFI GSGTDRDNGH RTYKK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.00148738177504	bayes_pls_golite062009
protein binding	0.74907889764975	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: