YRC Public Data Repository - Protein Structure Prediction

Protein:	GON1_TUPBE
Organism:	Tupaia belangeri
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GON1_TUPBE.

Description	E-value	Query Range	Subject Range
gi\|224191, gi\|34... - gi\|34357\|emb\|CAA25526.1\| unnamed protein product [Homo sapiens], gi\|224191\|prf\|\|1011296A luliberin p...	126.0	[0..1]	[92..1]
gi\|61368711, gi\|... - gi\|61368711\|gb\|AAX43225.1\| gonadotropin-releasing hormone 1 [synthetic construct], gi\|60829470\|gb\|AA...	124.0	[0..1]	[92..1]
GON1_HAPBU - Progonadoliberin-1 OS=Haplochromis burtoni GN=gnrh1 PE=1 SV=2	123.0	[0..3]	[90..1]
gi\|28849243, gi\|... - gi\|28849243\|dbj\|BAC65154.1\| seabream-type gonadotropin-releasing hormone precursor [Oreochromis nilo...	123.0	[0..3]	[90..1]
gi\|114619319, gi... - gi\|114619319\|ref\|XP_001160489.1\| PREDICTED: gonadotropin-releasing hormone 1 isoform 2 [Pan troglody...	123.0	[0..1]	[92..1]
GON1_RAT - Progonadoliberin-1 OS=Rattus norvegicus GN=Gnrh1 PE=2 SV=1 gi\|262060 - gi\|262060\|gb\|AAB24572.1\| luteinizing hormone-releasing hormone; LHRH [Rattus sp.]	119.0	[0..1]	[92..1]
gi\|50659042 - gi\|50659042\|gb\|AAT80334.1\| seabream-type gonadotropin-releasing hormone precursor [Rachycentron cana...	119.0	[0..3]	[90..1]
gi\|63391988 - gi\|63391988\|gb\|AAU94309.2\| prepro pejerrey-type gonadotropin-releasing hormone [Odontesthes bonarien...	117.0	[0..3]	[90..1]
gi\|109733046, gi... - gi\|109733857\|gb\|AAI16898.1\| Gnrh1 protein [Mus musculus], gi\|109733046\|gb\|AAI16900.1\| Gnrh1 protein ...	116.0	[0..1]	[92..5]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELVPKFLAG LILLTLCVGG CYAQHWSYGL RPGGKRNAEN LIDSFQEIAK EADQLAEPQH  60
   61 FECTISQPRS PLRALKGALE SLIEEETGQK KI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.779	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.675	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.643	a.252.1	Description not found.
View	Download	0.584	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.577	a.26.1	4-helical cytokines
View	Download	0.529	a.28.2	Colicin E immunity proteins
View	Download	0.393	a.28.2	Colicin E immunity proteins
View	Download	0.325	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits