YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|151946062
Organism:	Saccharomyces cerevisiae YJM789
Length:	117 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|151946062.

Description	E-value	Query Range	Subject Range
gi\|151946062 - gi\|151946062\|gb\|EDN64293.1\| coupling of ubiquitin conjugation to ER degradation [Saccharomyces cerev... gi\|190408145 - gi\|190408145\|gb\|EDV11410.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] CUE4_YEAST - CUE domain-containing protein CUE4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CUE4 ... CUE4 - Protein of unknown function; has a CUE domain that binds ubiquitin, which may facilitate intramolecu...	3.0E-61	[1..117]	[1..117]
SPCC4G3.13c - CUE domain protein Cue1 /4 family CUE4_SCHPO - CUE domain-containing protein 4, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843...	0.004	[52..115]	[26..89]

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Predicted Domain #1

Region A:
Residues: [1-53]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGSTIVFIL TMVCLFVYTV KHRGAKQVPS RTVQDAKPAP SVATNDPSPE PVP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [54-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAPEERVARL NRHGSDRKRA VNSDMVEIVM TMAPHVPQEK VVQDLRNTGS IEHTMENIFA  60
   61 GKLD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.408935
Match:	PF02845
Description:	CUE domain

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits