YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|162319330, gi...
Organism:	synthetic construct
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162319330, gi....

Description	E-value	Query Range	Subject Range
gi\|114609389 - gi\|114609389\|ref\|XP_518739.2\| PREDICTED: similar to A-kinase anchoring protein 18 gamma [Pan troglod...	0.0	[1..326]	[23..348]
gi\|109072709 - gi\|109072709\|ref\|XP_001103953.1\| PREDICTED: A-kinase anchor protein 7 [Macaca mulatta]	0.0	[1..326]	[1..326]
AKA7G_RAT - A-kinase anchor protein 7 isoforms delta and gamma OS=Rattus norvegicus GN=Akap7 PE=1 SV=1	0.0	[4..326]	[26..353]
gi\|31580808, gi\|... - gi\|75905475\|ref\|NP_061217.2\| A-kinase anchor protein 7 [Mus musculus], gi\|31580808\|gb\|AAP55205.1\| A ...	3.0E-96	[16..326]	[1..314]
gi\|76626051 - gi\|76626051\|ref\|XP_869646.1\| PREDICTED: similar to A-kinase anchor protein 7 isoform gamma (Protein ...	3.0E-93	[1..325]	[27..351]
gi\|73946359 - gi\|73946359\|ref\|XP_541245.2\| PREDICTED: similar to A-kinase anchor protein 7 isoform gamma (Protein ...	9.0E-86	[7..324]	[278..595]
gi\|30683966, gi\|... - gi\|46931306\|gb\|AAT06457.1\| At3g16220 [Arabidopsis thaliana], gi\|30683966\|ref\|NP_188243.2\| unknown pr...	3.0E-48	[25..261]	[9..254]
gi\|6706936, gi\|6... - gi\|6706936\|gb\|AAF25517.1\|AF058944_1 32 kDa putative non-structural protein [bovine coronavirus], gi\|... NS2A_CVBOK - Non-structural protein 2a OS=Bovine coronavirus (strain OK-0514) GN=2a PE=3 SV=1 NS2A_CVBLS - Non-structural protein 2a OS=Bovine coronavirus (strain LSU-94LSS-051) GN=2a PE=3 SV=1	4.0E-48	[59..292]	[5..221]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEEFEANTM DSLVDMPFAT VDIQDDCGIT DEPQINLKRS QENEWVKSDQ VKKRKKKRKD  60
   61 YQPNYFLSIP ITNKEIIKGI KILQNAIIQQ DERLAKAMVS DGSFHITLLV MQLLNEDEVN 120
  121 IGIDALLELK PFIEELLQGK HLTLPFQGIG TFGNQVGFVK LAEGDHVNSL LEIAETANRT 180
  181 FQEKGILVGE SRSFKPHLTF MKLSKSPWLR KNGVKKIDPD LYEKFISHRF GEEILYRIDL 240
  241 CSMLKKKQSN GYYHCESSIV IGEKNGGEPD DAELVRLSKR LVENAVLKAV QQYLEETQNK 300
  301 NKPGEGSSVK TEAADQNGND NENNRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1vdxA
Description:	Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits