YRC Public Data Repository - Protein Structure Prediction

Protein:	GRPE_RHIRD
Organism:	Agrobacterium tumefaciens
Length:	211 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GRPE_RHIRD.

Description	E-value	Query Range	Subject Range
GRPE_SINMW - Protein GrpE OS=Sinorhizobium medicae (strain WSM419) GN=grpE PE=3 SV=1	208.0	[0..1]	[203..1]
GRPE_RHIME - Protein GrpE OS=Rhizobium meliloti (strain 1021) GN=grpE PE=3 SV=1 GRPE_RHIME - Protein grpE OS=Rhizobium meliloti GN=grpE PE=3 SV=1	206.0	[0..1]	[203..1]
GRPE_RHIL3 - Protein GrpE OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=grpE PE=3 SV=1	202.0	[0..1]	[197..1]
GRPE_RHILO - Protein GrpE OS=Rhizobium loti (strain MAFF303099) GN=grpE PE=3 SV=1 GRPE_RHILO - Protein grpE OS=Rhizobium loti GN=grpE PE=3 SV=1	202.0	[0..35]	[211..33]
GRPE_CHESB - Protein GrpE OS=Chelativorans sp. (strain BNC1) GN=grpE PE=3 SV=1	202.0	[0..11]	[205..23]
gi\|74099845 - gi\|74099845\|gb\|AAZ99131.1\| GrpE [Rhizobium leguminosarum]	201.0	[0..1]	[197..1]
RPA0331 - RPA0331 possible heat shock protein (HSP-70 COFACTOR), grpE 358745:359371 forward MW:22207	201.0	[0..1]	[201..2]
UNKNOWN - Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 GRPE_RHOPA - Protein grpE OS=Rhodopseudomonas palustris GN=grpE PE=3 SV=2	201.0	[0..1]	[201..1]
gi\|78389205, gi\|... - gi\|78493664\|ref\|ZP_00845896.1\| GrpE protein [Rhodopseudomonas palustris BisB18], gi\|78389205\|gb\|EAP1...	198.0	[0..1]	[192..49]
gi\|146403979, gi... - gi\|78694306\|ref\|ZP_00858819.1\| possible heat shock protein (HSP-70 cofactor) [Bradyrhizobium sp. BTA...	198.0	[0..1]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-211]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDDTKKPGP DADVAEEFVD PAQAGEEQAE TAEPDPVELL KAENADLRDK FLRLAAEMDN  60
   61 LRRRTERDVK DAKAYSLAGF ARDMLAVSDN LRRALEAIPD ELKTNGEAGL NGLIEGVEMT 120
  121 ERSMLSTLER HGVKKIDAEG QKFDPNFHQA MFEVPNTAVP NNTVLQVIQA GFTIGDRVLR 180
  181 PAMVGVAKGG PKAEPSASAE PGTSSLNEKD A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.39794
Match:	1dkgA
Description:	Head domain of nucleotide exchange factor GrpE; Coiled-coil domain of nucleotide exchange factor GrpE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits