YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149732134
Organism:	Equus caballus
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149732134.

Description	E-value	Query Range	Subject Range
gi\|67971420 - gi\|67971420\|dbj\|BAE02052.1\| unnamed protein product [Macaca fascicularis]	4.0E-31	[1..77]	[1..77]
gi\|109070829 - gi\|109070829\|ref\|XP_001111611.1\| PREDICTED: similar to U1 small nuclear ribonucleoprotein C (U1 snRN...	3.0E-30	[1..159]	[166..324]
gi\|48128367, gi\|... - ref\|XP_396626.1\| similar to CG5454-PA [Apis mellifera], gi\|110758091\|ref\|XP_001120253.1\| PREDICTED: ...	1.0E-29	[1..69]	[1..69]
gi\|55670396 - gi\|55670396\|pdb\|1UW2\|A Chain A, The Structure Of The Zinc Finger From The Human Spliceosomal Protein...	1.0E-29	[2..61]	[2..61]
gi\|114565355 - gi\|114565355\|ref\|XP_513998.2\| PREDICTED: dynamin 3 [Pan troglodytes]	6.0E-29	[40..155]	[710..838]
gi\|50751043 - gi\|50751043\|ref\|XP_422232.1\| PREDICTED: similar to RIKEN cDNA 9630020E24 [Gallus gallus]	4.0E-28	[9..158]	[1488..1650]
gi\|94398328, gi\|... - gi\|94398328\|ref\|XP_982550.1\| PREDICTED: similar to U1 small nuclear ribonucleoprotein C (U1 snRNP pr...	5.0E-28	[1..159]	[35..193]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKFYCDYCD TYLTHDSPSV RKTHCSGRKH KENVKDYYQK WMEEQAQSLI DKTTAAFQQG  60
   61 K

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1uw2A
Description:	The structure of the zinc finger from the human spliceosomal protein U1C
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [62-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPTPFSAPP PAGAMIPPPP SLPGPPRPGM MPAPHMGGPP MMPMMGPPPP GMMPVGPAPG  60
   61 MRPPMGGHMP MMPGPPMMRP PARPMMVPTR PGMTRPDR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits