YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|3746427
Organism:	Plasmodium falciparum
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|3746427.

Description	E-value	Query Range	Subject Range
BACA_BACLI - Bacitracin synthase 1 OS=Bacillus licheniformis GN=bacA PE=3 SV=1	133.0	[0..5]	[137..491]
gi\|82502195 - gi\|82502195\|gb\|ABB80123.1\| SubA [Bacillus subtilis]	133.0	[0..5]	[137..491]
gi\|75907835, gi\|... - gi\|75907835\|ref\|YP_322131.1\| non-ribosomal peptide synthase [Anabaena variabilis ATCC 29413], gi\|757...	132.0	[0..5]	[136..1017]
gi\|186464983, gi... - gi\|23129065\|ref\|ZP_00110899.1\| COG1020: Non-ribosomal peptide synthetase modules and related protein...	132.0	[0..5]	[137..3736]
gi\|6563399 - gi\|6563399\|gb\|AAF17280.1\| NosC [Nostoc sp. GSV224]	130.0	[0..5]	[137..3177]
GRSB_ANEMI - Gramicidin S synthase 2 OS=Aneurinibacillus migulanus GN=grsB PE=3 SV=2	127.0	[0..6]	[137..924]
GRSB_BREBE - Gramicidin S synthase 2 OS=Brevibacillus brevis GN=grsB PE=1 SV=2	127.0	[0..6]	[137..924]

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Predicted Domain #1

Region A:
Residues: [1-61]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILLLCIIF LYYVNAFKNT QKDGVSLQIL KKKRSNQVNF LNRKNDYNLI KNKNPSSSLK  60
   61 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	12.69897
Match:	1amuA
Description:	Phenylalanine activating domain of gramicidin synthetase 1
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [62-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFDDIKKIIS KQLSVEEDKI QMNSNFTKDL GADSLDLVEL IMALEEKFNV TISDQDALKI  60
   61 NTVQDAIDYI EKNNKQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	2fq0A
Description:	No description for 2fq0A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits