YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149034016
Organism:	Rattus norvegicus
Length:	204 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149034016.

Description	E-value	Query Range	Subject Range
gi\|109469357, gi... - gi\|109471518\|ref\|XP_001059141.1\| PREDICTED: similar to MRG-binding protein [Rattus norvegicus], gi\|1...	306.0	[0..1]	[204..75]
gi\|84569914 - gi\|84569914\|gb\|AAI10994.1\| RIKEN cDNA 1600027N09 gene [Mus musculus]	296.0	[0..1]	[204..1]
gi\|208966030 - gi\|208966030\|dbj\|BAG73029.1\| chromosome 20 open reading frame 20 [synthetic construct] C20orf20 - chromosome 20 open reading frame 20	266.0	[0..19]	[204..19]
gi\|37681741 - gi\|37681741\|gb\|AAQ97748.1\| chromosome 20 open reading frame 20 [Danio rerio]	246.0	[0..1]	[204..1]
gi\|220957080, gi... - gi\|220957080\|gb\|ACL91083.1\| MrgBP-PA [synthetic construct], gi\|220947698\|gb\|ACL86392.1\| MrgBP-PA [sy... MrgBP-PA - The gene MrgBP is referred to in FlyBase by the symbol Dmel\MrgBP (CG13746, FBgn0033341). It is a pr...	223.0	[0..17]	[203..11]
gi\|50758767 - gi\|50758767\|ref\|XP_417408.1\| PREDICTED: similar to Protein C20orf20 [Gallus gallus]	222.0	[0..15]	[204..14]
gi\|71895785, gi\|... - gi\|71895785\|ref\|NP_001025681.1\| MGC97807 protein [Xenopus (Silurana) tropicalis], gi\|62530962\|gb\|AAH...	210.0	[0..1]	[204..1]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEAEVGGTG APGDKGPGEA APSPAEETVV WSPEVEVCLF HAMLGHKPVG VNRHFHMICI  60
   61 RDKFSQNIGR QVPSKVIWDH LSTMYDMQAL HESEILPFPN PERNFVLPDE IIQEVREGKV 120
  121 VIEEE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	37.187087
Match:	PF07904.4
Description:	No description for PF07904.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [126-204]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEEMKEDVD PHSGADDVFS SSGSLGKALE KSSKDKEKNS SDLGCKEGAD KRKRSRVTDK  60
   61 VLTANSNPSS PSAAKRRRT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits