YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|197751953, gi...
Organism:	Vibrio cholerae AM-19226
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|197751953, gi....

Description	E-value	Query Range	Subject Range
gi\|46908544, gi\|... - gi\|46908544\|ref\|YP_014933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogenes ...	145.0	[0..1]	[101..1]
gi\|47095852, gi\|... - gi\|47095852\|ref\|ZP_00233456.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene... gi\|127764552, gi... - gi\|153192012\|ref\|ZP_01939078.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|133731868, gi... - gi\|153180475\|ref\|ZP_01933518.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen... gi\|153175605, gi... - gi\|153175605\|ref\|ZP_01930933.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogen...	143.0	[0..1]	[101..42]
gi\|28899411, gi\|... - gi\|28899411\|ref\|NP_799016.1\| PTS system, cellobiose-specific IIB component [Vibrio parahaemolyticus ... gi\|198278122, gi... - gi\|28807647\|dbj\|BAC60900.1\| PTS system, cellobiose-specific IIB component [Vibrio parahaemolyticus R...	140.0	[0..1]	[101..1]
PTJB_BACSU, PTCB... - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis GN=licB PE=1 SV=1, (P... PTJB_BACSU - Lichenan-specific phosphotransferase enzyme IIB component OS=Bacillus subtilis (strain 168) GN=licB ... gi\|221321063 - gi\|221321063\|ref\|ZP_03602357.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221325348 - gi\|221325348\|ref\|ZP_03606642.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone... gi\|221316152 - gi\|221316152\|ref\|ZP_03597957.1\| phosphotransferase system (PTS) lichenan-specific enzyme IIB compone...	140.0	[0..3]	[99..2]
gi\|224500607 - gi\|224500607\|ref\|ZP_03668956.1\| hypothetical protein LmonF1_13411 [Listeria monocytogenes Finland 19... gi\|224503738 - gi\|224503738\|ref\|ZP_03672045.1\| hypothetical protein LmonFR_14764 [Listeria monocytogenes FSL R2-561... gi\|16804411 - gi\|16804411\|ref\|NP_465896.1\| hypothetical protein lmo2373 [Listeria monocytogenes EGD-e] gi\|16411861, gi\|... - pir\|\|AE1371 phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB component homolog lmo... gi\|254826366 - gi\|254826366\|ref\|ZP_05231367.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254829562 - gi\|254829562\|ref\|ZP_05234249.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|226224923, gi... - gi\|226224923\|ref\|YP_002759030.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB ... gi\|254901165 - gi\|254901165\|ref\|ZP_05261089.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254914048 - gi\|254914048\|ref\|ZP_05264060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254854476 - gi\|254854476\|ref\|ZP_05243824.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254880423 - gi\|254880423\|ref\|ZP_05253133.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254992401 - gi\|254992401\|ref\|ZP_05274591.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|255521508 - gi\|255521508\|ref\|ZP_05388745.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254933430 - gi\|254933430\|ref\|ZP_05266789.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c... gi\|254938363 - gi\|254938363\|ref\|ZP_05270060.1\| phosphotransferase system (PTS) beta-glucoside-specific enzyme IIB c...	139.0	[0..1]	[101..1]
gi\|89086742, gi\|... - gi\|89098497\|ref\|ZP_01171380.1\| PTS system, cellobiose-specific IIB component [Bacillus sp. NRRL B-14...	139.0	[0..3]	[101..21]
gi\|46917091, gi\|... - gi\|54303660\|ref\|YP_133653.1\| PTS system cellobiose-specific IIB component [Photobacterium profundum ...	138.0	[0..1]	[101..26]
gi\|37199835, gi\|... - gi\|37681085\|ref\|NP_935694.1\| phosphotransferase system cellobiose-specific component IIB [Vibrio vul...	138.0	[0..1]	[101..2]
gi\|150019349, gi... - gi\|82746001\|ref\|ZP_00908510.1\| similar to cellobiose phosphotransferase enzyme IIB component [Clostr...	138.0	[0..1]	[100..1]
gi\|47017094, gi\|... - gi\|47094531\|ref\|ZP_00232197.1\| PTS system, cellobiose-specific, IIB component [Listeria monocytogene...	138.0	[0..1]	[101..26]

Back

Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKILLCCSA GMSTSMLVKK MQQAAESKGI ECKIDALSVN AFEEAIQEYD VCLLGPQVRF  60
   61 QLEELRKTAD EYGKNIAAIS PQAYGMMKGD EVLQQALDLI N

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	1h9cA
Description:	Enzyme IIB-cellobiose
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein-N(PI)-phosphohistidine-sugar phosphotransferase activity	5.08041453921791	bayes_pls_golite062009
carbohydrate transmembrane transporter activity	4.49138214292642	bayes_pls_golite062009
glucoside transmembrane transporter activity	1.83892097143526	bayes_pls_golite062009
sugar transmembrane transporter activity	1.77053981674308	bayes_pls_golite062009
transporter activity	1.6837050020547	bayes_pls_golite062009
transmembrane transporter activity	1.5685227361887	bayes_pls_golite062009
substrate-specific transporter activity	1.32293422112884	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.217268678967	bayes_pls_golite062009
active transmembrane transporter activity	1.12964417923438	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	0.71593290802554	bayes_pls_golite062009
catalytic activity	0.676259875978821	bayes_pls_golite062009
beta-glucoside transmembrane transporter activity	0.50967675887857	bayes_pls_golite062009
binding	0.472595683811139	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.37663629577414	bayes_pls_golite062009
fructose transmembrane transporter activity	0.225562559709031	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.0296784994545702	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: