YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|70780290
Organism:	Plasmodium falciparum
Length:	609 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|70780290.

Description	E-value	Query Range	Subject Range
Su(var)3-3-PB, S... - The gene Suppressor of variegation 3-3 is referred to in FlyBase by the symbol Dmel\Su(var)3-3 (CG17... gi\|220947432 - gi\|220947432\|gb\|ACL86259.1\| Hdm-PA [synthetic construct]	226.0	[0..8]	[605..258]
gi\|68387817, gi\|... - gi\|68387877\|ref\|XP_686754.1\| PREDICTED: similar to Lysine-specific histone demethylase 1 (Amine oxid...	224.0	[0..8]	[604..243]
gi\|73950244 - gi\|73950244\|ref\|XP_535366.2\| PREDICTED: similar to amine oxidase (flavin containing) domain 2 isofor...	222.0	[0..8]	[604..293]
gi\|71052047 - gi\|71052047\|gb\|AAH40194.3\| AOF2 protein [Homo sapiens]	222.0	[0..8]	[604..292]
gi\|76611580 - gi\|76611580\|ref\|XP_612243.2\| PREDICTED: similar to amine oxidase (flavin containing) domain 2 isofor...	222.0	[0..8]	[604..262]
gi\|114554620 - gi\|114554620\|ref\|XP_513190.2\| PREDICTED: hypothetical protein [Pan troglodytes]	222.0	[0..8]	[604..244]
gi\|50759643 - gi\|50759643\|ref\|XP_417719.1\| PREDICTED: similar to AOF2 protein [Gallus gallus]	222.0	[0..8]	[604..293]
gi\|108999060 - gi\|108999060\|ref\|XP_001111525.1\| PREDICTED: amine oxidase (flavin containing) domain 2 [Macaca mulat...	222.0	[0..8]	[604..414]
gi\|118793419, gi... - gi\|118793419\|ref\|XP_320852.3\| ENSANGP00000004834 [Anopheles gambiae str. PEST], gi\|116117369\|gb\|EAA0...	221.0	[0..8]	[605..103]

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Predicted Domain #1

Region A:
Residues: [1-609]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEYKKYNVP SHEIYDVILI GGGLFNCCLY YYLKLKNSEL SIIIVEKEEN LGGYIKTYTY  60
   61 NIDDKKILVE LGPNMFKLCN ESYNLINKLN LLSSVRLLDD TLIRYIYIKN DKLYPLYLNI 120
  121 FSYLSFPLIN ISNKIKLLFK LIFKQYKNLN SYTNDISVEN YMNDNFDSQH YNFLLLPFIY 180
  181 GSCAGNGKIS AVSFFSRNLK LFHNKVNSLY IWNEKIKSEE KNRNIKCVNN NTFIYQHMNK 240
  241 KKKNFNLFTP CYNFFYISNK NMKMDVYLNV LYNYYSSNKK TEKKNVFNYI CYRIPILLLH 300
  301 MKQFSINIFR HISIFLKCTY QFFYPFLMLP DLAKWTTSHF DDEKKKKKNL IGKTVTFKNG 360
  361 LYELIDKLQS HMNKEFIYTN HEVDFIEKAY NNLWMCNIKH ENQNKTIYGK NIVLAVNSKI 420
  421 CSNIMRNILP VNIRDILLNF SYSSIISISL YFKKSDINIP KNFFGFLSSD KCAHILGCFH 480
  481 INNMFKERCH DDNKVLLTLY MGGSNHPNDI TLDEYEIKEI ISNDLKNIFD IYNDAQPNIL 540
  541 KIHKWKDAIP FYSYNYEKLL KKVMEELNKL SYKNLYLDSG WITGTSISDR IRSAQDLCEY 600
  601 IFSLTNLAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.221849
Match:	2iw5A
Description:	No description for 2iw5A was found.

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.03768022092949	bayes_pls_golite062009
oxidoreductase activity	0.78682363509228	bayes_pls_golite062009
transcription regulator activity	0.0696342306231097	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: