YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149038775
Organism:	Rattus norvegicus
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149038775.

Description	E-value	Query Range	Subject Range
gi\|109089524 - gi\|109089524\|ref\|XP_001105457.1\| PREDICTED: similar to RTP801 [Macaca mulatta]	346.0	[0..4]	[229..430]
gi\|73952868 - gi\|73952868\|ref\|XP_546156.2\| PREDICTED: similar to RTP801 isoform 1 [Canis familiaris]	334.0	[0..1]	[229..1]
DDIT4_BOVIN - DNA damage-inducible transcript 4 protein OS=Bos taurus GN=DDIT4 PE=2 SV=1	334.0	[0..1]	[229..1]
DDIT4_RAT - DNA damage-inducible transcript 4 protein OS=Rattus norvegicus GN=Ddit4 PE=1 SV=1	333.0	[0..1]	[229..1]
gi\|114631154 - gi\|114631154\|ref\|XP_507843.2\| PREDICTED: similar to DNA-damage-inducible transcript 4 [Pan troglodyt...	330.0	[0..4]	[229..270]
DDIT4 - DNA-damage-inducible transcript 4 gi\|123994967, gi... - gi\|123994967\|gb\|ABM85085.1\| DNA-damage-inducible transcript 4 [synthetic construct], gi\|123980162\|gb...	314.0	[0..1]	[229..1]
DDIT4_XENTR - DNA damage-inducible transcript 4 protein OS=Xenopus tropicalis GN=ddit4 PE=2 SV=1	310.0	[0..1]	[229..1]
DDIT4_XENLA - DNA damage-inducible transcript 4 protein OS=Xenopus laevis GN=ddit4 PE=2 SV=1	307.0	[0..1]	[229..1]
gi\|17432247 - gi\|17432247\|gb\|AAL39013.1\|AF327512_1 SMHS1 [Mus musculus]	281.0	[0..43]	[229..8]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSLWDRFSS SSSSSSSSRT PAADRPPRSA WGSAAREEGL DRCASLESSD CESLDSSNSG  60
   61 FGPEEDSSYL DGVSLPDFE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [80-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLSDPEDEHL CANLMQLLQE SLSQARLGSR RPARLLMPSQ LVSQVGKELL RLAYSEPCGL  60
   61 RGALLDVCVE QGKSCHSVAQ LALDPSLVPT FQLTLVLRLD SRLWPKIQGL LSSANSSLVP 120
  121 GYSQSLTLST GFRVIKKKLY SSEQLLIEEC

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.638272
Match:	PF07809.2
Description:	No description for PF07809.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits