YRC Public Data Repository - Protein Structure Prediction

Protein:	HMRR_RHIME
Organism:	Sinorhizobium meliloti
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HMRR_RHIME.

Description	E-value	Query Range	Subject Range
HMRR2_RHIME, HMR... - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti GN=hmrR2 PE=3 SV=1, (P58379) H... HMRR2_RHIME - Heavy metal-dependent transcription regulator 2 OS=Rhizobium meliloti (strain 1021) GN=hmrR2 PE=3 SV...	152.0	[0..1]	[147..1]
gi\|45682348, gi\|... - gi\|69278512\|ref\|ZP_00613618.1\| regulatory protein, MerR [Mesorhizobium sp. BNC1], gi\|68190741\|gb\|EAN...	145.0	[0..1]	[143..1]
gi\|15888277, gi\|... - gi\|17934846\|ref\|NP_531636.1\| transcriptional regulator, MerR family [Agrobacterium tumefaciens str. ... gi\|25302889, gi\|... - pir\|\|AB2692 transcription regulator, MerR family cueR [imported] - Agrobacterium tumefaciens (strain...	144.0	[0..1]	[140..1]
gi\|17430370 - gi\|17430370\|emb\|CAD17135.1\| probable transcription regulator protein [Ralstonia solanacearum GMI1000... gi\|17548064 - gi\|17548064\|ref\|NP_521466.1\| transcription regulator protein [Ralstonia solanacearum GMI1000]	144.0	[0..2]	[132..16]
gi\|68348510, gi\|... - gi\|70734211\|ref\|YP_257851.1\| Cu(I)-responsive transcriptional regulator [Pseudomonas fluorescens Pf-...	143.0	[0..1]	[133..1]
HMRR1_RHIME, HMR... - Heavy metal-dependent transcription regulator 1 OS=Rhizobium meliloti GN=hmrR1 PE=3 SV=1, (P58378) H... HMRR1_RHIME - Heavy metal-dependent transcription regulator 1 OS=Rhizobium meliloti (strain 1021) GN=hmrR1 PE=3 SV...	143.0	[0..1]	[146..1]
gi\|76882052, gi\|... - gi\|77163738\|ref\|YP_342263.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani ATCC 1... gi\|207088264 - gi\|207088264\|gb\|EDZ65536.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC27] gi\|224408610, gi... - gi\|254435153\|ref\|ZP_05048660.1\| Cu(I)-responsive transcriptional regulator [Nitrosococcus oceani AFC...	141.0	[0..1]	[128..2]
gi\|115260178, gi... - gi\|116255530\|ref\|YP_771363.1\| MerR family heavy metal dependent transcriptional regulator [Rhizobium...	140.0	[0..1]	[147..1]
gi\|119374841, gi... - gi\|69936174\|ref\|ZP_00631034.1\| regulatory protein, MerR [Paracoccus denitrificans PD1222], gi\|691525...	140.0	[0..3]	[145..4]
gi\|72120470, gi\|... - gi\|73543057\|ref\|YP_297577.1\| MerR family transcriptional regulator [Ralstonia eutropha JMP134], gi\|7...	140.0	[0..1]	[138..1]

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Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNIGEASKVS GVSSKMIRYY EQIGLISPAV RTASSYRTYG DNDVHTLRFI RRARDLGFSV  60
   61 EQIKELLALW RDRSRASSDV KAVALEHIAE LERKIAAIQD MTRTLKHLAS HCHGDGRPDC 120
  121 PIIEEMAKGG GAAKTEINPR FGVASLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1q05A
Description:	Crystal structure of the Cu(I) form of E. coli CueR, a copper efflux regulator
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits