YRC Public Data Repository - Protein Structure Prediction

Protein:	HO1_SYNY3
Organism:	Synechocystis sp. PCC 6803
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for HO1_SYNY3.

Description	E-value	Query Range	Subject Range
gi\|31415692 - gi\|31415692\|gb\|AAP45707.1\| heme oxygenase 1 [Expression vector pAT101]	312.0	[0..1]	[240..25]
gi\|71671435, gi\|... - gi\|71675319\|ref\|ZP_00673064.1\| Heme oxygenase (decyclizing) [Trichodesmium erythraeum IMS101], gi\|71...	311.0	[0..1]	[236..1]
gi\|22297908, gi\|... - gi\|22297908\|ref\|NP_681155.1\| heme oxygenase 1 [Thermosynechococcus elongatus BP-1], gi\|22294086\|dbj\|...	302.0	[0..1]	[236..2]
gi\|78168074, gi\|... - gi\|78183780\|ref\|YP_376214.1\| Heme oxygenase (decyclizing) [Synechococcus sp. CC9902], gi\|78168074\|gb...	298.0	[0..1]	[236..7]
gi\|186681144, gi... - gi\|4105611\|gb\|AAD02479.1\| heme oxygenase; HO1 [Nostoc punctiforme], gi\|23124602\|ref\|ZP_00106581.1\| C...	297.0	[0..1]	[236..1]
gi\|56687204, gi\|... - gi\|56752245\|ref\|YP_172946.1\| heme oxygenase [Synechococcus elongatus PCC 6301], gi\|56687204\|dbj\|BAD8... gi\|45513325, gi\|... - gi\|81300667\|ref\|YP_400875.1\| Heme oxygenase (decyclizing) [Synechococcus elongatus PCC 7942], gi\|811...	297.0	[0..1]	[236..1]
gi\|116065235, gi... - gi\|116071612\|ref\|ZP_01468880.1\| Heme oxygenase (decyclizing) [Synechococcus sp. BL107], gi\|116065235...	296.0	[0..1]	[236..1]
gi\|116074454, gi... - gi\|116074454\|ref\|ZP_01471716.1\| Heme oxygenase [Synechococcus sp. RS9916], gi\|116069759\|gb\|EAU75511....	294.0	[0..1]	[236..1]
HMOX1_MOUSE - Heme oxygenase 1 OS=Mus musculus GN=Hmox1 PE=1 SV=1	294.0	[0..1]	[239..9]
gi\|33864707, gi\|... - gi\|33864707\|ref\|NP_896266.1\| Heme oxygenase [Synechococcus sp. WH 8102], gi\|33632230\|emb\|CAE06686.1\|...	293.0	[0..1]	[236..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVNLASQLR EGTKKSHSMA ENVGFVKCFL KGVVEKNSYR KLVGNLYFVY SAMEEEMAKF  60
   61 KDHPILSHIY FPELNRKQSL EQDLQFYYGS NWRQEVKISA AGQAYVDRVR QVAATAPELL 120
  121 VAHSYTRYLG DLSGGQILKK IAQNAMNLHD GGTAFYEFAD IDDEKAFKNT YRQAMNDLPI 180
  181 DQATAERIVD EANDAFAMNM KMFNELEGNL IKAIGIMVFN SLTRRRSQGS TEVGLATSEG 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.0
Match:	1we1A
Description:	Crystal structure of heme oxygenase-1 from cyanobacterium Synechocystis sp. PCC6803 in complex with heme
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits