YRC Public Data Repository - Protein Structure Prediction

Protein:	IDNT_ECOLI
Organism:	Escherichia coli
Length:	439 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IDNT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83363652, gi\|... - gi\|83375123\|ref\|ZP_00919887.1\| TRAP dicarboxylate transporter, DctM subunit [Rhodobacter sphaeroides...	209.0	[0..4]	[437..375]
gi\|25504467 - pir\|\|A95272 hypothetical protein SMa0151 [imported] - Sinorhizobium meliloti (strain 1021) magaplasm... gi\|16262534, gi\|... - gi\|16262534\|ref\|NP_435327.1\| hypothetical protein SMa0151 [Sinorhizobium meliloti 1021], gi\|14523143...	182.0	[0..53]	[437..1]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	170.0	[0..5]	[400..515]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	163.0	[0..5]	[438..500]
gi\|84387730, gi\|... - gi\|84387730\|ref\|ZP_00990746.1\| C4-dicarboxylate transport protein [Vibrio splendidus 12B01], gi\|8437... gi\|218323197, gi... - gi\|218710178\|ref\|YP_002417799.1\| DctQ, TRAP-type C4-dicarboxylate transport system, large permease c...	162.0	[0..5]	[436..1]
gi\|86147630, gi\|... - gi\|86147630\|ref\|ZP_01065939.1\| C4-dicarboxylate transport protein [Vibrio sp. MED222], gi\|85834541\|g...	162.0	[0..5]	[436..1]
gi\|254229910, gi... - gi\|75854030\|ref\|ZP_00761754.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	162.0	[0..7]	[436..3]
gi\|26111606, gi\|... - gi\|26251174\|ref\|NP_757214.1\| Gnt-II system L-idonate transporter [Escherichia coli CFT073], gi\|26111... gi\|170684304, gi... - gi\|170684304\|ref\|YP_001746669.1\| Gnt-II system L-idonate transporter [Escherichia coli SMS-3-5], gi\|... gi\|117626609, gi... - gi\|117626609\|ref\|YP_859932.1\| L-idonate and D-gluconate transporter [Escherichia coli APEC O1], gi\|1... gi\|218702968, gi... - gi\|218702968\|ref\|YP_002410597.1\| L-idonate and D-gluconate transporter [Escherichia coli IAI39], gi\|... gi\|227886681, gi... - gi\|227886681\|ref\|ZP_04004486.1\| GntP family gluconate:proton (H+) symporter [Escherichia coli 83972]... gi\|91075395, gi\|... - gi\|91213821\|ref\|YP_543807.1\| IdnT L-idonate Gnt tranporter [Escherichia coli UTI89], gi\|91075395\|gb\|... gi\|237703941, gi... - gi\|237703941\|ref\|ZP_04534422.1\| gnt-II system L-idonate transporter [Escherichia sp. 3_2_53FAA], gi\|... gi\|110644624, gi... - gi\|110644624\|ref\|YP_672354.1\| Gnt-II system L-idonate transporter [Escherichia coli 536], gi\|1103462... gi\|75228078, gi\|... - gi\|75228078\|ref\|ZP_00714753.1\| COG2610: H+/gluconate symporter and related permeases [Escherichia co... gi\|74314744, gi\|... - gi\|74314744\|ref\|YP_313163.1\| L-idonate transporter [Shigella sonnei Ss046], gi\|73858221\|gb\|AAZ90928....	162.0	[0..1]	[439..1]
gi\|194554935, gi... - gi\|84323909\|ref\|ZP_00971975.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ... gi\|115588537, gi... - gi\|32044546\|ref\|ZP_00141647.1\| COG1593: TRAP-type C4-dicarboxylate transport system, large permease ...	162.0	[0..5]	[438..1]
gi\|254164190, gi... - gi\|254164190\|ref\|YP_003047300.1\| L-idonate and D-gluconate transporter [Escherichia coli B str. REL6... gi\|253326156, gi... - gi\|254290940\|ref\|YP_003056690.1\| L-idonate and D-gluconate transporter [Escherichia coli BL21(DE3)],... gi\|242379784, gi... - gi\|251787511\|ref\|YP_003001815.1\| hypothetical protein B21_04095 [Escherichia coli BL21], gi\|24237978... gi\|31323184 - gi\|31323184\|gb\|AAP43528.1\| IdnT [Escherichia coli B]	162.0	[0..1]	[439..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLIIIAAGV ALLLILMIGF KVNGFIALVL VAAVVGFAEG MDAQAVLHSI QNGIGSTLGG  60
   61 LAMILGFGAM LGKLISDTGA AQRIATTLIA TFGKKRVQWA LVITGLVVGL AMFFEVGFVL 120
  121 LLPLVFTIVA SS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [133-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLPLLYVGVP MVAALSVTHC FLPPHPGPTA IATIFEANLG TTLLYGFIIT IPTVIVAGPL  60
   61 FSKLLTRFEK APPEGLFNPH LFSEEEMPSF WNSIFAAVIP VILMAIAAVC EITLPKT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-439]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NTVRLFFEFV GNPAVALFIA IVIAIFTLGR RNGRTIEQIM DIIGDSIGAI AMIVFIIAGG  60
   61 GAFKQVLVDS GVGHYISHLM TGTTLSPLLM CWTVAALLRI ALGSATVAAI TTAGVVLPII 120
  121 NVTHADPALM VLATGAGSVI ASHVNDPGFW LFKGYFNLTV GETLRTWTVM ETLISIMGLL 180
  181 GVLAINAVLH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits