YRC Public Data Repository - Protein Structure Prediction

Protein:	INS2_XENLA
Organism:	Xenopus laevis
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INS2_XENLA.

Description	E-value	Query Range	Subject Range
INS_CHICK - Insulin OS=Gallus gallus GN=INS PE=1 SV=1	128.0	[0..1]	[106..1]
INS1_XENLA - Insulin-1 OS=Xenopus laevis GN=ins-a PE=1 SV=2	126.0	[0..1]	[106..1]
INS_CYPCA - Insulin OS=Cyprinus carpio GN=ins PE=1 SV=1	125.0	[0..1]	[106..1]
gi\|13991923 - gi\|13991923\|gb\|AAK51558.1\|AF373021_1 preproinsulin [Catla catla]	123.0	[0..1]	[106..1]
gi\|13517219 - gi\|13517219\|gb\|AAK28709.1\| preproinsulin [Catostomus commersoni]	122.0	[0..1]	[106..1]
gi\|9408409 - gi\|9408409\|gb\|AAF87285.1\|AF227187_1 preproinsulin [Rana pipiens]	119.0	[0..1]	[106..1]
INS_LOPPI - (P01341) Insulin precursor INS_LOPAM - Insulin OS=Lophius americanus GN=ins PE=3 SV=1	118.0	[0..2]	[106..3]
INS1_RAT - Insulin-1 OS=Rattus norvegicus GN=Ins1 PE=1 SV=1	118.0	[0..1]	[106..1]
gi\|307072 - gi\|307072\|gb\|AAA59179.1\| insulin [Homo sapiens]	118.0	[0..1]	[106..1]
INS_SELRF - Insulin (Fragment) OS=Selasphorus rufus GN=INS PE=3 SV=1	117.0	[0..20]	[106..17]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWMQCLPL VLVLLFSTPN TEALANQHLC GSHLVEALYL VCGDRGFFYY PKIKRDIEQA  60
   61 QVNGPQDNEL DGMQFQPQEY QKMKRGIVEQ CCHSTCSLFQ LENYCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.09691
Match:	1efeA
Description:	Insulin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits