YRC Public Data Repository - Protein Structure Prediction

Protein:	INSN_SHIDY
Organism:	Shigella dysenteriae
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for INSN_SHIDY.

Description	E-value	Query Range	Subject Range
gi\|62128900, gi\|... - gi\|62181267\|ref\|YP_217684.1\| transposase insN [Salmonella enterica subsp. enterica serovar Choleraes...	108.0	[0..1]	[112..1]
gi\|221589257, gi... - gi\|84060922\|ref\|YP_444134.1\| IS911 transposase [Escherichia coli], gi\|76781996\|gb\|AAX22069.2\| IS911 ...	107.0	[0..1]	[100..1]
gi\|31983618, gi\|... - gi\|31983618\|ref\|NP_858401.1\| IS911 ORF1 [Shigella flexneri 2a str. 301], gi\|24115424\|ref\|NP_709934.1... gi\|31983618, gi\|... - gi\|31983618\|ref\|NP_858401.1\| IS911 ORF1 [Shigella flexneri 2a str. 301], gi\|18462610\|gb\|AAL72382.1\| ...	106.0	[0..1]	[112..1]
INN1_ECOLI, INSN... - Transposase insN for insertion sequence element IS911A - Escherichia coli, (P75679) Transposase insN... gi\|1786449, gi\|1... - gi\|1786449\|gb\|AAC73358.1\| CP4-6 prophage; partial regulator of insertion element IS911A [Escherichia... gi\|170079880, gi... - gi\|170079880\|ref\|YP_001729200.1\| CP4-6 prophage; partial regulator of insertion element IS911A [Esch... gi\|89107128, gi\|... - gi\|89107128\|ref\|AP_000908.1\| partial regulator of insertion element IS911A [Escherichia coli str. K-...	106.0	[0..1]	[100..1]
gi\|82524719, gi\|... - gi\|82524808\|ref\|YP_406369.1\| IS911 ORF1 [Shigella boydii Sb227], gi\|82524719\|ref\|YP_406280.1\| IS911 ...	105.0	[0..1]	[112..1]
gi\|195940104 - gi\|195940104\|ref\|ZP_03085486.1\| hypothetical protein EscherichcoliO157_27559 [Escherichia coli O157:... gi\|7465897, gi\|3... - pir\|\|T00224 hypothetical 12.7K protein - Escherichia coli plasmid pO157 insertion sequence IS911, g... gi\|75994491, gi\|... - gi\|75994491\|ref\|YP_325605.1\| hypothetical protein L7045 [Escherichia coli O157:H7], gi\|3822159\|gb\|AA... gi\|75994491 - gi\|75994491\|ref\|YP_325605.1\| hypothetical protein L7045 [Escherichia coli O157:H7 EDL933] gi\|3337012, gi\|1... - gi\|3337012\|dbj\|BAA31771.1\| IS911 [Escherichia coli O157:H7 str. Sakai], gi\|10955280\|ref\|NP_052621.1\|...	105.0	[0..1]	[112..1]
gi\|110805857, gi... - gi\|110805857\|ref\|YP_689377.1\| IS911 ORF1 [Shigella flexneri 5 str. 8401], gi\|110615405\|gb\|ABF04072.1...	104.0	[0..1]	[112..1]
gi\|13449227, gi\|... - gi\|13449227\|ref\|NP_085443.1\| IS911 orfA [Shigella flexneri], gi\|13310775\|gb\|AAK18599.1\|AF348706_288 ... gi\|13310775\|gb\|A... - IS911 orfA [Shigella flexneri]	104.0	[0..1]	[111..1]
gi\|81240196, gi\|... - gi\|82776048\|ref\|YP_402395.1\| IS911 ORF1 [Shigella dysenteriae Sd197], gi\|81240196\|gb\|ABB60906.1\| IS9...	104.0	[0..3]	[112..10]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MICSPQNNTG APMKKRNFSA EFKRESAQLV VDQNYTVADA AKAMDVGLST MTRWVKQLRD  60
   61 ERQGKTPKAS PITPEQIEIR ELRKKLQRIE MENEILKKAT ALLMSDSLNS SR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	10.30103
Match:	2jn6A
Description:	No description for 2jn6A was found.

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
binding	1.095333525217	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: