YRC Public Data Repository - Protein Structure Prediction

Protein:	ISPH_GEOSL
Organism:	Geobacter sulfurreducens
Length:	282 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ISPH_GEOSL.

Description	E-value	Query Range	Subject Range
ISPH_PSEE4 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas entomophila (strain L48) GN=ispH P... gi\|95112630 - gi\|95112630\|emb\|CAK17358.1\| hydroxymethylbutenyl pyrophosphate reductase [Pseudomonas entomophila L4...	441.0	[0..1]	[278..1]
gi\|58425845, gi\|... - gi\|58581251\|ref\|YP_200267.1\| 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Xanthomonas oryzae ...	440.0	[0..1]	[278..51]
ISPH_PSEF5 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BA...	439.0	[0..1]	[278..1]
ISPH_PSEPG - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas putida (strain GB-1) GN=ispH PE=3 ... ISPH_PSEPK - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas putida (strain KT2440) GN=ispH PE=...	438.0	[0..1]	[278..1]
ISPH_PSE14 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas savastanoi pv. phaseolicola (strai...	438.0	[0..1]	[278..1]
tr\|E4RGR3\|E4RGR3... - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas putida (strain BIRD-1) GN=ispH PE=... tr\|I7BI70\|I7BI70... - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas putida (strain DOT-T1E) GN=ispH PE... ISPH_PSEP1 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas putida (strain F1 / ATCC 700007) G...	437.0	[0..1]	[278..1]
ISPH_PSEU2 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas syringae pv. syringae (strain B728...	436.0	[0..1]	[278..1]
ISPH_HAHCH - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Hahella chejuensis (strain KCTC 2396) GN=ispH ...	436.0	[0..1]	[279..1]
gi\|126170626, gi... - gi\|84317054\|ref\|ZP_00965510.1\| COG0761: Penicillin tolerance protein [Pseudomonas aeruginosa C3719],... gi\|32423755\|gb\|A... - drug tolerance protein [Pseudomonas aeruginosa] gi\|194555530, gi... - gi\|84323197\|ref\|ZP_00971273.1\| COG0761: Penicillin tolerance protein [Pseudomonas aeruginosa 2192], ... ISPH_PSEA8 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain LESB58) GN=ispH... ISPH_PSEAB - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=... gi\|32423755 - gi\|32423755\|gb\|AAP81279.1\| drug tolerance protein [Pseudomonas aeruginosa]	435.0	[0..1]	[278..1]
gi\|150959385, gi... - gi\|94416152\|ref\|ZP_01295982.1\| hypothetical protein PaerP_01001995 [Pseudomonas aeruginosa PA7], gi\|...	435.0	[0..1]	[281..1]

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Predicted Domain #1

Region A:
Residues: [1-74]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIVLAKRAG FCFGVKRATQ MAFEAAEKEG ETFTLGPIIH SPQVVQRLEG MGVKVLSDLE  60
   61 GIGNGTVIIR SHGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [75-282]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSAELEDAVR RQLEVVDATC PFVKKAQEHV KRLSHDGYTV VVVGDADHPE VQGIVSYAEG  60
   61 PVHVVGSGEE AARLPNMKKV GVVAQTTQSF ETLKNVVKEC LLKGGEIRVF NTICDATAVR 120
  121 QDEAKALARE VDCMIVIGGF NSANTKRLAE VCSELQPRTY HIETAQELDA SWFQGVERVG 180
  181 VTAGASTPKW LIDEVIERIQ EFDNKKKG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits