YRC Public Data Repository - Protein Structure Prediction

Protein:	LEA5D_GOSHI
Organism:	Gossypium hirsutum
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEA5D_GOSHI.

Description	E-value	Query Range	Subject Range
LEA5A_GOSHI - Late embryogenesis abundant protein Lea5-A OS=Gossypium hirsutum GN=LEA5-A PE=2 SV=1	137.0	[0..1]	[105..1]
gi\|7489163, gi\|2... - pir\|\|T01984 late-embryogenesis protein lea5 - common tobacco, gi\|2981167\|gb\|AAC06242.1\| late embryog...	134.0	[0..1]	[105..1]
gi\|3193289, gi\|7... - pir\|\|T01312 hypothetical protein T14P8.2 - Arabidopsis thaliana, gi\|7268998\|emb\|CAB80731.1\| AT4g023...	132.0	[0..1]	[102..110]
gi\|255627541, gi... - pir\|\|T08871 desiccation protective protein LEA5 - soybean, gi\|255627541\|gb\|ACU14115.1\| unknown [Gly...	123.0	[0..1]	[100..1]
LEA5_CITSI - Late embryogenesis abundant protein Lea5 OS=Citrus sinensis GN=LEA5 PE=2 SV=1	122.0	[0..1]	[105..1]
gi\|76573297, gi\|... - gi\|77999305\|gb\|ABB16999.1\| unknown [Solanum tuberosum], gi\|76573297\|gb\|ABA46753.1\| unknown [Solanum ...	122.0	[0..1]	[104..1]
gi\|1370589 - gi\|1370589\|emb\|CAA66948.1\| protein induced upon tuberization [Solanum demissum]	121.0	[0..1]	[104..1]
gi\|90404835, gi\|... - gi\|90404835\|gb\|ABD93883.1\| group 5 late embryogenesis abundant protein [Citrus unshiu], gi\|90404816\|...	121.0	[0..1]	[105..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSVSSFKL LGASIFDGLY VSISRRGYSG APPAAVTASF GRPGAMGKVE RRDAMKESSS  60
   61 SETRAYSSAW APDPVTGYYR PENCGAEIDA AELREMLLNH RVRSQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.113509
Match:	PF03242.4
Description:	No description for PF03242.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits