YRC Public Data Repository - Protein Structure Prediction

Protein:	LEA5_CITSI
Organism:	Citrus sinensis
Length:	97 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEA5_CITSI.

Description	E-value	Query Range	Subject Range
gi\|90404835, gi\|... - gi\|90404835\|gb\|ABD93883.1\| group 5 late embryogenesis abundant protein [Citrus unshiu], gi\|90404816\|...	135.0	[0..1]	[97..1]
gi\|7489163, gi\|2... - pir\|\|T01984 late-embryogenesis protein lea5 - common tobacco, gi\|2981167\|gb\|AAC06242.1\| late embryog...	134.0	[0..1]	[97..1]
gi\|3193289, gi\|7... - pir\|\|T01312 hypothetical protein T14P8.2 - Arabidopsis thaliana, gi\|7268998\|emb\|CAB80731.1\| AT4g023...	120.0	[0..1]	[94..110]
gi\|52788395 - gi\|52788395\|gb\|AAU87300.1\| LEA [Pinus halepensis]	110.0	[0..1]	[94..1]
gi\|76782046, gi\|... - gi\|76782046\|gb\|ABA54795.1\| late embryogenesis abundant protein [Picea glauca], pir\|\|T09146 late-embr... gi\|76782082 - gi\|76782082\|gb\|ABA54813.1\| late embryogenesis abundant protein [Picea mariana]	110.0	[0..1]	[93..1]
gi\|255627541, gi... - pir\|\|T08871 desiccation protective protein LEA5 - soybean, gi\|255627541\|gb\|ACU14115.1\| unknown [Gly...	109.0	[0..1]	[92..1]
gi\|76573297, gi\|... - gi\|77999305\|gb\|ABB16999.1\| unknown [Solanum tuberosum], gi\|76573297\|gb\|ABA46753.1\| unknown [Solanum ...	109.0	[0..1]	[93..1]
LEA5D_GOSHI - Late embryogenesis abundant protein Lea5-D OS=Gossypium hirsutum GN=LEA5-D PE=2 SV=1	109.0	[0..1]	[97..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARSLFKAKL LLAPVADGIS LSISRRGYAA AAPLGTISRT GIMEKNDLRP AVREDSGASS  60
   61 AWAPDPITGY YRPENRAVEI DPAELREMLL NHKVRAH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	54.853872
Match:	PF03242.4
Description:	No description for PF03242.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.522	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.522	N/A	N/A	a.100.1	6-phosphogluconate dehydrogenase C-terminal domain-like
View	Download	0.483	N/A	N/A	a.280.1	Description not found.
View	Download	0.481	N/A	N/A	a.69.3	1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain
View	Download	0.460	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.419	N/A	N/A	c.23.14	Nucleoside 2-deoxyribosyltransferase
View	Download	0.409	N/A	N/A	a.3.1	Cytochrome c
View	Download	0.400	N/A	N/A	a.24.7	FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
View	Download	0.395	N/A	N/A	a.22.1	Histone-fold
View	Download	0.392	N/A	N/A	a.74.1	Cyclin-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits