YRC Public Data Repository - Protein Structure Prediction

Protein:	MERT_ALCSP
Organism:	Alcaligenes sp.
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MERT_ALCSP.

Description	E-value	Query Range	Subject Range
gi\|21239245 - gi\|21239245\|gb\|AAM44223.1\|AF461013_2 MerT [Klebsiella pneumoniae] gi\|2117131 - gi\|2117131\|emb\|CAA70239.1\| mercuric ion transport protein [Escherichia coli]	168.0	[0..2]	[116..22]
gi\|117615103, gi... - gi\|78684820\|ref\|ZP_00849602.1\| putative mercuric transport protein [Shewanella sp. ANA-3], gi\|785073... gi\|2117120 - gi\|2117120\|emb\|CAA70228.1\| mercuric ion transport protein [Enterobacter cloacae]	164.0	[0..2]	[116..17]
gi\|133756187, gi... - gi\|221218605\|ref\|YP_002527563.1\| mercury resistance operon mercuric transport protein MerT [Escheric... gi\|89103288 - gi\|89103288\|ref\|ZP_01175872.1\| hypothetical protein Ypesb_01002686 [Yersinia pestis biovar Orientali... gi\|142856073, gi... - gi\|145301296\|ref\|YP_001144136.1\| putative mercuric transport protein [Aeromonas salmonicida subsp. s...	162.0	[0..1]	[116..19]
MERT_ENTAG - Mercuric transport protein OS=Enterobacter agglomerans GN=merT PE=3 SV=1	160.0	[0..2]	[116..12]
gi\|31746423, gi\|... - gi\|31795179\|ref\|NP_858037.1\| putative mercuric transport protein [uncultured bacterium], gi\|31746423...	158.0	[0..1]	[116..19]
gi\|2947087 - gi\|2947087\|gb\|AAC38231.1\| mercury transport protein [Pseudomonas stutzeri]	155.0	[0..1]	[116..1]
gi\|226425894, gi... - gi\|226809979\|ref\|YP_002791673.1\| MerT [Enterobacter cloacae], gi\|226807669\|ref\|YP_002791363.1\| MerT ... gi\|90265381, gi\|... - gi\|90265381\|emb\|CAJ77063.1\| Mercuric ion transport protein [Acinetobacter baumannii], gi\|225121185\|g... gi\|190710534 - gi\|190710534\|gb\|ACE95097.1\| MerT, mercuric ion transport protein [Pseudomonas aeruginosa] gi\|38259422, gi\|... - gi\|38347945\|ref\|NP_941194.1\| putative mercuric transport protein [Serratia marcescens], gi\|38259422\|... gi\|16505869, gi\|... - gi\|18466553\|ref\|NP_569361.1\| putative mercuric transport protein [Salmonella enterica subsp. enteric...	155.0	[0..2]	[116..7]
gi\|30248846, gi\|... - gi\|30248846\|ref\|NP_840916.1\| putative mercuric transport protein [Nitrosomonas europaea ATCC 19718],...	154.0	[0..1]	[116..1]
gi\|150393, gi\|74... - gi\|7444781\|pir\|\|S09523 merTA protein, 12.4K - plasmid NR1, gi\|150393\|gb\|AAB59075.1\| 12.4 kd merTA pr... gi\|37962795, gi\|... - gi\|58383316\|ref\|YP_194889.1\| putative mercuric transport protein [Salmonella typhimurium], gi\|379627... MERT_SHIFL - Mercuric transport protein OS=Shigella flexneri GN=merT PE=4 SV=1 gi\|2159996 - gi\|2159996\|dbj\|BAA20335.1\| mercuric transport protein [Pseudomonas sp. K-62] gi\|228861741, gi... - gi\|89033285\|gb\|ABD59963.1\| mercuric ion transport protein [Escherichia coli], gi\|87295509\|gb\|ABD3705... gi\|34915814 - gi\|34915814\|emb\|CAD83848.1\| MerT protein [Pseudomonas sp. A19-1] gi\|5103150, gi\|9... - gi\|9507551\|ref\|NP_052882.1\| putative mercuric transport protein [Plasmid R100], gi\|5103150\|dbj\|BAA78... gi\|11071887 - gi\|11071887\|emb\|CAC14698.1\| MerT, mercuric ion transport protein [Pseudomonas sp. ED23-33] gi\|133905395, gi... - gi\|165938095\|ref\|ZP_02226655.1\| mercuric transport protein (Mercury ion transport protein) [Yersinia... gi\|18466616, gi\|... - gi\|18466616\|ref\|NP_569424.1\| putative mercuric transport protein [Salmonella enterica subsp. enteric... gi\|148283750 - gi\|148283750\|gb\|ABQ57374.1\| MerT [Salmonella enterica subsp. enterica serovar Kentucky] gi\|84094986, gi\|... - gi\|84310706\|ref\|YP_447036.1\| putative mercuric transport protein [uncultured bacterium], gi\|84094986... gi\|145848988 - gi\|145848988\|emb\|CAM91542.1\| mercuric transport protein [Salmonella enterica] MERT_SALTI - Mercuric transport protein OS=Salmonella typhi GN=merT PE=3 SV=1 gi\|194411199, gi... - gi\|75207808\|ref\|ZP_00708304.1\| hypothetical protein EcolB_01004821 [Escherichia coli B171], gi\|19443... MERT_SALTI - Mercuric transport protein OS=Salmonella typhi GN=merT PE=3 SV=1 gi\|194337947 - gi\|194337947\|emb\|CAQ51359.1\| mercuric ion transport protein [Salmonella enterica subsp. enterica ser... gi\|194421127, gi... - gi\|194439932\|ref\|ZP_03071993.1\| mercuric transport protein [Escherichia coli 101-1], gi\|194421127\|gb... gi\|160431827, gi... - gi\|160431827\|ref\|YP_001551941.1\| putative mercuric transport protein [Salmonella enterica subsp. ent... gi\|222111319, gi... - gi\|222111319\|ref\|YP_002553583.1\| Mercuric transport protein MerT [Diaphorobacter sp. TPSY], gi\|22173... gi\|194709297, gi... - gi\|194733795\|ref\|YP_002112961.1\| mercuric transport protein [Salmonella enterica subsp. enterica ser...	153.0	[0..1]	[116..1]
gi\|15920009, gi\|... - gi\|15920009\|ref\|NP_361069.1\| putative mercuric transport protein [Plasmid pSB102], gi\|15722308\|emb\|C...	153.0	[0..1]	[116..1]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPQNGRGA LFAGGLAAIL ASACCLGPLV LIALGFSGAW IGNLTVLEPY RPIFIGAALV  60
   61 ALFFAWRRIY RPAQACKPGE VCAIPQVRAT YKLIFWIVAA LVLVALGFPY VMPFFY

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	87.958607
Match:	PF02411.6
Description:	No description for PF02411.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.950	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.950	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.847	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.847	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.841	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.816	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.772	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.772	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.724	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.724	N/A	N/A	a.7.2	Enzyme IIa from lactose specific PTS, IIa-lac
View	Download	0.680	N/A	N/A	a.7.8	GAT domain
View	Download	0.543	N/A	N/A	a.7.8	GAT domain
View	Download	0.488	N/A	N/A	d.67.3	Ribosome recycling factor, RRF
View	Download	0.484	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.480	N/A	N/A	a.7.8	GAT domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits