YRC Public Data Repository - Protein Structure Prediction

Protein:	KCNE1_FELCA
Organism:	Felis catus
Length:	129 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCNE1_FELCA.

Description	E-value	Query Range	Subject Range
gi\|74001418 - gi\|74001418\|ref\|XP_544868.2\| PREDICTED: similar to Potassium voltage-gated channel subfamily E membe...	220.0	[0..1]	[129..265]
gi\|114683988 - gi\|114683988\|ref\|XP_001167449.1\| PREDICTED: similar to Potassium voltage-gated channel subfamily E m...	220.0	[0..1]	[127..22]
gi\|60834886 - gi\|60834886\|gb\|AAX37115.1\| potassium voltage-gated channel Isk-related family member 1 [synthetic co...	216.0	[0..1]	[127..1]
gi\|208967108 - gi\|208967108\|dbj\|BAG73568.1\| potassium voltage-gated channel, Isk-related family, member 1 [syntheti... gi\|16151155 - gi\|16151155\|gb\|AAL13162.1\| potassium voltage-gated channel ISK-related family member 1 [Cavia porcel... gi\|49456471, gi\|... - gi\|603451\|gb\|AAA63905.1\| delayed rectifier potassium channel, gi\|55777836\|gb\|AAH46224.1\| Potassium v...	215.0	[0..1]	[127..1]
KCNE1_PONAB - Potassium voltage-gated channel subfamily E member 1 OS=Pongo abelii GN=KCNE1 PE=2 SV=1 KCNE1_PONPY - Potassium voltage-gated channel subfamily E member 1 - Pongo pygmaeus (Orangutan)	215.0	[0..1]	[127..1]
gi\|61839629, gi\|... - gi\|86438242\|gb\|AAI12874.1\| Potassium voltage-gated channel, Isk-related family, member 1 [Bos taurus...	213.0	[0..1]	[126..1]
gi\|109065415, gi... - gi\|109065421\|ref\|XP_001089178.1\| PREDICTED: potassium voltage-gated channel, Isk-related family, mem...	211.0	[0..1]	[127..1]
KCNE1_CAVPO - Potassium voltage-gated channel subfamily E member 1 OS=Cavia porcellus GN=KCNE1 PE=2 SV=1	211.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPNTTATT PFLNALWQGT AHQGGNTSGL ARRSPGGDDS QLEALYILMV LGFFGFFTLG  60
   61 IMLSYIRSKK LEHSHDPFNV YIESDTWQEK DKAYLQARVL ESYKACYVIE NQLAVERPNA 120
  121 HLPEIKPLS

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	93.387216
Match:	PF02060.6
Description:	No description for PF02060.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
sterol transporter activity	2.32644439822296	bayes_pls_golite062009
transporter activity	2.14109596816038	bayes_pls_golite062009
binding	2.07958768787661	bayes_pls_golite062009
substrate-specific transporter activity	1.83720018336737	bayes_pls_golite062009
protein binding	1.27629764253179	bayes_pls_golite062009
lipid transporter activity	1.00299501325019	bayes_pls_golite062009
cholesterol transporter activity	0.547985386953939	bayes_pls_golite062009
receptor binding	0.505487622742061	bayes_pls_golite062009
cell surface binding	0.477993862794682	bayes_pls_golite062009
copper ion binding	0.421055853272666	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: