YRC Public Data Repository - Protein Structure Prediction

Protein:	MSRB1_RHIME, MSB...
Organism:	Sinorhizobium meliloti
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSRB1_RHIME, MSB....

Description	E-value	Query Range	Subject Range
gi\|115368847, gi... - gi\|115374180\|ref\|ZP_01461467.1\| peptide methionine sulfoxide reductase MsrB [Stigmatella aurantiaca ...	232.0	[0..10]	[133..67]
MSRB_THEEB - Peptide methionine sulfoxide reductase MsrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB P... MSRB_SYNEL - Peptide methionine sulfoxide reductase msrB OS=Synechococcus elongatus GN=msrB PE=3 SV=1	232.0	[0..6]	[135..1]
gi\|86558601, gi\|... - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Synechococcus sp. JA-2-3B'a(2-13)], g... gi\|86610059 - gi\|86610059\|ref\|YP_478821.1\| methionine-R-sulfoxide reductase [Cyanobacteria bacterium Yellowstone B...	230.0	[0..3]	[134..33]
MSRB_AGRFC - Peptide methionine sulfoxide reductase MsrB OS=Agrobacterium fabrum (strain C58 / ATCC 33970) GN=msr... gi\|25302988, gi\|... - gi\|25302988\|pir\|\|AD2688 transcription regulator Atu0908 [imported] - Agrobacterium tumefaciens (stra...	227.0	[0..1]	[134..1]
gi\|15964744 - gi\|15964744\|ref\|NP_385097.1\| hypothetical protein SMc00117 [Sinorhizobium meliloti 1021] gi\|15073922 - gi\|15073922\|emb\|CAC45563.1\| CONSERVED HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]	227.0	[0..1]	[135..19]
gi\|116699061, gi... - gi\|71544925\|ref\|ZP_00665902.1\| Protein of unknown function DUF25 [Syntrophobacter fumaroxidans MPOB]...	226.0	[0..2]	[135..50]
gi\|87137021, gi\|... - gi\|87201340\|ref\|YP_498597.1\| protein-methionine-S-oxide reductase [Novosphingobium aromaticivorans D...	226.0	[0..1]	[134..1]
gi\|108764748, gi... - gi\|68562385\|ref\|ZP_00601648.1\| Protein of unknown function DUF25 [Rubrobacter xylanophilus DSM 9941]...	225.0	[0..3]	[134..2]
gi\|116069106, gi... - gi\|116073801\|ref\|ZP_01471063.1\| Methionine sulfoxide reductase B [Synechococcus sp. RS9916], gi\|1160...	224.0	[0..2]	[133..8]
gi\|116121855, gi... - gi\|116329111\|ref\|YP_798831.1\| methionine sulfoxide reductase B [Leptospira borgpetersenii serovar Ha...	223.0	[0..3]	[135..34]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENRMPKIT KTNEEWRAAL TPEQYRVTRE HGTERPFTGP FLDNKRHGTY KCVCCGRALF  60
   61 RSDTKFDSGC GWPSYFAPVD PDAIAEYVDR SHLMVRTEIR CADCDAHLGH VFPDGPPPTG 120
  121 LRYCLNGTAM TFEED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.30103
Match:	1l1dA
Description:	C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits