| Protein: | MSX2_RAT |
| Organism: | Rattus norvegicus |
| Length: | 139 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MSX2_RAT.
| Description | E-value | Query Range |
Subject Range |
|
|
128.0 | [0..3] | [139..178] |
|
|
126.0 | [0..2] | [119..34] |
|
|
126.0 | [0..1] | [139..129] |
|
|
125.0 | [0..1] | [139..129] |
|
|
124.0 | [0..1] | [139..2] |
|
|
124.0 | [0..1] | [139..145] |
|
Region A: Residues: [1-139] |
1 11 21 31 41 51
| | | | | |
1 MSPTTCTLRK HKTNRKPRTP FTTSQLLALE RKFRQKQYLS IAERAEFSSS LNLTETQVKI 60
61 WFQNRRAKAK RLQEAELEKL KMAAKPMLPS GFSLPFPINS PLQAASIYSA SYPFHRPVLP 120
121 IPPVGLYATP VGYGMYHLS
|
| Detection Method: |  |
| Confidence: | 15.0 |
| Match: | 1qryA |
| Description: | VND/NK-2 protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| transcription regulator activity | 4.09839603329852 | bayes_pls_golite062009 |
| DNA binding | 3.70287146988839 | bayes_pls_golite062009 |
| nucleic acid binding | 3.64380968064654 | bayes_pls_golite062009 |
| transcription factor activity | 3.09799997792958 | bayes_pls_golite062009 |
| transcription repressor activity | 2.67989581172015 | bayes_pls_golite062009 |
| binding | 2.38790799849051 | bayes_pls_golite062009 |
| RNA polymerase II transcription factor activity | 2.24140562598253 | bayes_pls_golite062009 |
| protein binding | 1.88087411289001 | bayes_pls_golite062009 |
| sequence-specific DNA binding | 1.50388788083093 | bayes_pls_golite062009 |
| transcription activator activity | 0.868489910606103 | bayes_pls_golite062009 |
| specific RNA polymerase II transcription factor activity | 0.83458785143486 | bayes_pls_golite062009 |
| chromatin binding | 0.806325172844419 | bayes_pls_golite062009 |
| transcription corepressor activity | 0.657260016132472 | bayes_pls_golite062009 |
| transcription factor binding | 0.54291661516816 | bayes_pls_golite062009 |
| transcription cofactor activity | 0.012862302676295 | bayes_pls_golite062009 |
