YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|31455234, gi\|...
Organism:	Homo sapiens
Length:	166 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31455234, gi|....

Description	E-value	Query Range	Subject Range
gi\|55741522 - ref\|NP_001006961.1\| similar to hypothetical protein HSPC242 [Rattus norvegicus] gi\|53733512, gi\|... - gi\|55741522\|ref\|NP_001006961.1\| mitochondrial protein 18 kDa [Rattus norvegicus], gi\|53733512\|gb\|AAH...	2.0E-76	[1..165]	[1..165]
gi\|12848562 - gi\|12848562\|dbj\|BAB27999.1\| unnamed protein product [Mus musculus]	1.0E-75	[1..165]	[1..165]
gi\|73995426 - gi\|73995426\|ref\|XP_543478.2\| PREDICTED: similar to mitochondrial protein 18 kDa isoform a [Canis fam...	2.0E-73	[1..166]	[1..166]
gi\|111308589, gi... - gi\|115497128\|ref\|NP_001069331.1\| mitochondrial protein 18 kDa [Bos taurus], gi\|111308589\|gb\|AAI20146...	4.0E-72	[1..166]	[1..166]
gi\|114685850 - gi\|114685850\|ref\|XP_001142360.1\| PREDICTED: SEC14-like 2 isoform 2 [Pan troglodytes]	7.0E-68	[24..166]	[362..504]
CE30453 - WBGene00000245 locus:bca-1 status:Confirmed TR:Q8T3C8 protein_id:AAM15604.1	7.0E-68	[10..162]	[9..162]
gi\|55233756, gi\|... - gi\|58395802\|ref\|XP_321500.2\| AGAP001603-PA [Anopheles gambiae str. PEST], gi\|55233756\|gb\|EAA01350.3\|... gi\|21436531, gi\|... - gi\|21436531\|emb\|CAD29635.1\| putative protein [Anopheles gambiae], gi\|19572988\|emb\|CAD28128.1\| putati...	1.0E-61	[9..155]	[4..149]

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Predicted Domain #1

Region A:
Residues: [1-166]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPQPRGAE RDLYRDTWVR YLGYANEVGE AFRSLVPAAV VWLSYGVASS YVLADAIDKG  60
   61 KKAGEVPSPE AGRSARVTVA VVDTFVWQAL ASVAIPGFTI NRVCAASLYV LGTATRWPLA 120
  121 VRKWTTTALG LLTIPIIIHP IDRSVDFLLD SSLRKLYPTV GKPSSS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits