YRC Public Data Repository - Protein Structure Prediction

Protein:	NO10_METAC, NOP1...
Organism:	Methanosarcina acetivorans
Length:	51 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NO10_METAC, NOP1....

Description	E-value	Query Range	Subject Range
NOP10_PYRKO - Ribosome biogenesis protein Nop10 OS=Pyrococcus kodakaraensis GN=TK1101 PE=3 SV=1 NOP10_THEKO - Ribosome biogenesis protein Nop10 OS=Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KO...	83.0	[0..1]	[50..1]
NOP10_SULSO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus GN=SSO7115 PE=3 SV=1, (Q97Z78) Ribosome... NOP10_SULSO - Ribosome biogenesis protein Nop10 OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 113...	79.0	[0..1]	[51..1]
gi\|88192801, gi\|... - gi\|88192802\|pdb\|2EY4\|F Chain F, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex, gi\|88192801\|pdb\|2EY4...	79.0	[0..1]	[50..1]
gi\|14591746 - gi\|14591746\|ref\|NP_142880.1\| H/ACA RNA-protein complex component Nop10p [Pyrococcus horikoshii OT3]	79.0	[0..1]	[50..1]
NOP10_PYRAB, NO1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi GN=PYRAB08470 PE=1 SV=1, (Q9V0E3) Ribosome bi... NOP10_PYRAB - Ribosome biogenesis protein Nop10 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=nop10 PE=1 SV=1	78.0	[0..1]	[50..1]
NOP10_SULTO - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140... NOP10_SULTO, NO1... - Ribosome biogenesis protein Nop10 OS=Sulfolobus tokodaii GN=ST0940.1 PE=3 SV=1, (Q973G1) Ribosome bi...	78.0	[0..1]	[51..1]
NO10_PYRFU, NOP1... - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus GN=PF1141 PE=1 SV=1, (Q8U1R4) Ribosome biog... NOP10_PYRFU - Ribosome biogenesis protein Nop10 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / ...	77.0	[0..1]	[50..1]
NOP10_THEAC - Ribosome biogenesis protein Nop10 OS=Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 90... NOP10_THEAC - Ribosome biogenesis protein Nop10 OS=Thermoplasma acidophilum GN=Ta1202 PE=3 SV=1	72.0	[0..1]	[51..1]
gi\|13541242 - gi\|13541242\|ref\|NP_110930.1\| H/ACA RNA-protein complex component Nop10p [Thermoplasma volcanium GSS1...	72.0	[0..1]	[47..1]
NOP10_METBF - Ribosome biogenesis protein Nop10 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=nop10 PE=3 ...	72.0	[0..1]	[51..1]

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Predicted Domain #1

Region A:
Residues: [1-51]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGQKIRKCKN CGRYTLREKC PVCGGVTLPA IPARFSPQDP YGKYRRLAKK G

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits