YRC Public Data Repository - Protein Structure Prediction

Protein:	NOP10_TRYCR
Organism:	Trypanosoma cruzi
Length:	63 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NOP10_TRYCR.

Description	E-value	Query Range	Subject Range
gi\|74272683 - gi\|74272683\|gb\|ABA01137.1\| nucleolar RNA-binding putative [Chlamydomonas incerta]	97.0	[0..1]	[63..1]
gi\|49121065, gi\|... - gi\|67902534\|ref\|XP_681523.1\| hypothetical protein AN8254.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	97.0	[0..1]	[59..1]
gi\|47213487 - gi\|47213487\|emb\|CAF91144.1\| unnamed protein product [Tetraodon nigroviridis]	96.0	[0..1]	[63..1]
NOP10_DANRE - H/ACA ribonucleoprotein complex subunit 3 OS=Danio rerio GN=nop10 PE=3 SV=1	96.0	[0..1]	[63..1]
gi\|110749879 - gi\|110749879\|ref\|XP_001120529.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Apis me...	96.0	[0..1]	[60..1]
gi\|57226489, gi\|... - gi\|58266200\|ref\|XP_570256.1\| hypothetical protein CND01790 [Cryptococcus neoformans var. neoformans ... gi\|50258390, gi\|... - gi\|50258390\|gb\|EAL21079.1\| hypothetical protein CNBD4550 [Cryptococcus neoformans var. neoformans B-...	94.0	[0..1]	[63..1]
NOP10_MOUSE - H/ACA ribonucleoprotein complex subunit 3 OS=Mus musculus GN=Nop10 PE=3 SV=1 gi\|149022902, gi... - gi\|186910255\|ref\|NP_001119572.1\| nucleolar protein family A, member 3 [Rattus norvegicus], gi\|149022... NOP10 - NOP10 ribonucleoprotein homolog (yeast) gi\|114656176, gi... - gi\|114656176\|ref\|XP_001165865.1\| PREDICTED: nucleolar protein family A, member 3 isoform 2 [Pan trog...	93.0	[0..1]	[63..1]
gi\|66806107, gi\|... - gi\|66806107\|ref\|XP_636775.1\| Nop10 family protein [Dictyostelium discoideum AX4], gi\|60465172\|gb\|EAL... NOP10_DICDI - H/ACA ribonucleoprotein complex subunit 3 OS=Dictyostelium discoideum GN=nop10 PE=3 SV=1	93.0	[0..1]	[60..1]
gi\|73999753 - gi\|73999753\|ref\|XP_849017.1\| PREDICTED: similar to nucleolar protein family A, member 3 [Canis famil...	93.0	[0..1]	[63..103]
gi\|62859217, gi\|... - gi\|62859217\|ref\|NP_001016163.1\| nucleolar protein family A, member 3 (H/ACA small nucleolar RNPs) [X...	93.0	[0..1]	[63..1]

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Predicted Domain #1

Region A:
Residues: [1-63]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLQVYIVNG KRQYTLKKMD PEGKPTLSAH PARFSPDDKY SRHRITIKRR FKALKSEKRP  60
   61 KPL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.69897
Match:	1y2yA
Description:	Structural Characterization of Nop10p using Nuclear Magnetic Resonance Spectroscopy
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits