YRC Public Data Repository - Protein Structure Prediction

Protein:	PDXK_ECOLI
Organism:	Escherichia coli
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDXK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|28211403, gi\|... - gi\|28211403\|ref\|NP_782347.1\| hydroxymethylpyrimidine kinase [Clostridium tetani E88], gi\|28203844\|gb...	224.0	[0..1]	[279..11]
gi\|106895590, gi... - gi\|158321715\|ref\|YP_001514222.1\| phosphomethylpyrimidine kinase [Alkaliphilus oremlandii OhILAs], gi...	221.0	[0..1]	[279..5]
gi\|149948927, gi... - gi\|77686688\|ref\|ZP_00802021.1\| Phosphomethylpyrimidine kinase [Alkaliphilus metalliredigenes QYMF], ...	217.0	[0..1]	[279..5]
gi\|110674810, gi... - gi\|110800163\|ref\|YP_695988.1\| phosphomethylpyrimidine kinase [Clostridium perfringens ATCC 13124], g...	216.0	[0..1]	[279..8]
gi\|255517037 - gi\|255517037\|ref\|ZP_05384713.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-9... gi\|255650139 - gi\|255650139\|ref\|ZP_05397041.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-3... gi\|115250640, gi... - gi\|126699203\|ref\|YP_001088100.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile 630]... gi\|254975231 - gi\|254975231\|ref\|ZP_05271703.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-6... gi\|255092621 - gi\|255092621\|ref\|ZP_05322099.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile CIP 1... gi\|255100727 - gi\|255100727\|ref\|ZP_05329704.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-6... gi\|255314358 - gi\|255314358\|ref\|ZP_05355941.1\| putative phosphomethylpyrimidine kinase [Clostridium difficile QCD-7...	216.0	[0..1]	[279..9]
gi\|110802744, gi... - gi\|110802744\|ref\|YP_698658.1\| phosphomethylpyrimidine kinase [Clostridium perfringens SM101], gi\|110...	214.0	[0..1]	[279..8]
gi\|18145000, gi\|... - gi\|18310320\|ref\|NP_562254.1\| phosphomethylpyrimidine kinase [Clostridium perfringens str. 13], gi\|18...	214.0	[0..1]	[279..8]
gi\|27468610, gi\|... - gi\|27468610\|ref\|NP_765247.1\| phosphomethylpyrimidine kinase [Staphylococcus epidermidis ATCC 12228],... gi\|57638290, gi\|... - gi\|57867632\|ref\|YP_189265.1\| phosphomethylpyrimidine kinase [Staphylococcus epidermidis RP62A], gi\|5...	213.0	[0..1]	[279..8]
gi\|20808610 - gi\|20808610\|ref\|NP_623781.1\| Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Thermoanaerobac... gi\|20808610, gi\|... - gi\|20808610\|ref\|NP_623781.1\| hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Thermoanaerobac... gi\|214034926, gi... - gi\|254479155\|ref\|ZP_05092505.1\| phosphomethylpyrimidine kinase [Carboxydibrachium pacificum DSM 1265...	209.0	[0..14]	[279..18]
gi\|222824123, gi... - gi\|57240536\|ref\|ZP_00368485.1\| phosphomethylpyrimidine kinase [Campylobacter lari RM2100], gi\|570188...	209.0	[0..1]	[279..13]

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Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLLLFNDK SRALQADIVA VQSQVVYGSV GNSIAVPAIK QNGLNVFAVP TVLLSNTPHY  60
   61 DTFYGGAIPD EWFSGYLRAL QERDALRQLR AVTTGYMGTA SQIKILAEWL TALRKDHPDL 120
  121 LIMVDPVIGD IDSGIYVKPD LPEAYRQYLL PLAQGITPNI FELEILTGKN CRDLDSAIAA 180
  181 AKSLLSDTLK WVVVTSASGN EENQEMQVVV VTADSVNVIS HSRVKTDLKG TGDLFCAQLI 240
  241 SGLLKGKALT DAVHRAGLRV LEVMRYTQQH ESDELILPPL AEA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	2ddmA
Description:	No description for 2ddmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits