YRC Public Data Repository - Protein Structure Prediction

Protein:	PONA_DICDI
Organism:	Dictyostelium discoideum
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PONA_DICDI.

Description	E-value	Query Range	Subject Range
gi\|60462408, gi\|... - gi\|66800281\|ref\|XP_629066.1\| actin binding protein [Dictyostelium discoideum AX4], gi\|60462408\|gb\|EA... PONE_DICDI - Ponticulin-like protein E OS=Dictyostelium discoideum GN=ponE PE=3 SV=1	186.0	[0..17]	[143..17]
gi\|531360 - gi\|531360\|emb\|CAA85301.1\| Ponticulin [Dictyostelium discoideum]	149.0	[0..17]	[143..12]

Back

Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVLRNLLAL VTLALLFTLS SAQYTLSVSN SASGSKCTTA VSAKLNACNT GCLNSFNIVE  60
   61 SSNGKGLVFK TFINAACSGE YESLSQFTCA ANQKIPTTSY IVSCNSTPSS NSTTDSDSSS 120
  121 GSTVMIGLAS SLLFAFATLL ALF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits